lran2008 Goto Github PK
Type: User
Type: User
Python scripts for miscellaneous bioinformatics stuff.
Pipeline to identify interesting Y chromosome genes
Generate an interactive dot plot from mummer or minimap alignments
Python GUI for automating gatk analysis
A shell script which implements GATK pipeline for variant calling.
GATK Pipeline: Recalibrates mapping qualities and calls variants using GATK
GFF and GTF file manipulation and interconversion
Tools for F1 hybrid PSMC (hPSMC) divergence time inference from whole genomes
Copy of the last aligner
Automatically exported from code.google.com/p/lncrscan
:exclamation: This is a read-only mirror of the CRAN R package repository. metaRNASeq — Meta-analysis of RNA-seq data
Meta-analysis package for RNA-seq count data
An R package for the analysis, meta-analysis and result reporting of RNA-Seq gene expression data
Multiple Genome Synteny Viewer
Fast and accurate de novo assembler for third generation sequencing (TGS) reads
An attempt to help anyone interested in using Perl for Bioinformatics
Pi_N and Pi_S estimation from NGS data using R
A genomics pipeline build on top of the GATK Queue framework. Main repository: https://github.com/NationalGenomicsInfrastructure/piper (make sure you fork from there)
Implementation of the Pairwise Sequentially Markovian Coalescent (PSMC) model
RNA-seq Graph Builder is a method to reconstruct the Isoform Graph of a gene from RNA-seq data, without the genome information, where such a graph is a representation of the variants of alternative splicing of the gene structure.
This is a collection of small scripts built by the Lenz lab to make RNA sequencing tasks more efficient.
Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis including an introduction to: cloud computing, critical file formats, reference genomes, gene annotation, expression, differential expression, alternative splicing, data visualization, and interpretation.
RSEM: accurate quantification of gene and isoform expression from RNA-Seq data
Scripts for parsing the output from the Tophat/Cufflinks/Cuffcompare pipeline into other formats and analyzing and editing GTF files.
Managing and running psmc/msmc with data and simulations
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.