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Leszek Pryszcz's Projects

abstracts icon abstracts

Create the Book of Abstracts from responses in spreadsheet (.xlsx) / google forms

badges icon badges

Repository to create badges for the attendees of conference/workshop

biopython icon biopython

Official git repository for Biopython (converted from CVS)

bonito icon bonito

Convolution Basecaller for Oxford Nanopore Reads

bwa icon bwa

Burrow-Wheeler Aligner for pairwise alignment between DNA sequences

chiron icon chiron

A basecaller for Oxford Nanopore Technologies' sequencers

deeplexicon icon deeplexicon

Signal based nanopore RNA demultiplexing with convolutional neural networks

dorado icon dorado

A LibTorch Basecaller for Oxford Nanopore Reads

eif icon eif

Extended Isolation Forest for Anomaly Detection

emacs-for-python icon emacs-for-python

Collection of emacs extensions specifically collected for python development, with workflow guidelines!

ete icon ete

Python package for building, comparing, annotating, manipulating and visualising trees. It provides a comprehensive API and a collection of command line tools, including utilities to work with the NCBI taxonomy tree.

go icon go

Playground for golang

gsheet icon gsheet

Short function extension to gsheet

jetson_nanopore_sequencing icon jetson_nanopore_sequencing

A place to collate notes and resources of our journey into porting nanopore sequencing over to accessible, portable technology.

last icon last

LAST FORK. LAST finds similar regions between sequences.

megsap icon megsap

a Medical Genetics Sequence Analysis Pipeline

nanorms icon nanorms

Prediction of RNA modification stoichiometry from per-read current intensity information using KNN and KMEANS algorithms

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