lpryszcz Goto Github PK

abstracts

Create the Book of Abstracts from responses in spreadsheet (.xlsx) / google forms

badges

Repository to create badges for the attendees of conference/workshop

bin

My bioinfo toolbox

bioconda-recipes

Conda recipes for the bioconda channel.

biopython

Official git repository for Biopython (converted from CVS)

bonito

Convolution Basecaller for Oxford Nanopore Reads

bwa

Burrow-Wheeler Aligner for pairwise alignment between DNA sequences

chiron

A basecaller for Oxford Nanopore Technologies' sequencers

deeplexicon

Signal based nanopore RNA demultiplexing with convolutional neural networks

docker

Docker builds

dorado

A LibTorch Basecaller for Oxford Nanopore Reads

eif

Extended Isolation Forest for Anomaly Detection

emacs-for-python

Collection of emacs extensions specifically collected for python development, with workflow guidelines!

ete

Python package for building, comparing, annotating, manipulating and visualising trees. It provides a comprehensive API and a collection of command line tools, including utilities to work with the NCBI taxonomy tree.

fasta2iprscan

fastaindex

FastA indexing and sequence retrival.

go

Playground for golang

gsheet

Short function extension to gsheet

hicembler

Assembler for HiC data

jetson_nanopore_sequencing

A place to collate notes and resources of our journey into porting nanopore sequencing over to accessible, portable technology.

jupyter

Public Jupyter from NGSchool

last

LAST FORK. LAST finds similar regions between sequences.

latex-moderncv

My latex resume using the moderncv template

lpryszcz

masurca

megsap

a Medical Genetics Sequence Analysis Pipeline

metaphors_api

API to access metaPhOrs database

minion

minION toolbox

monty_hall

simple implementation demonstrating Monty Hall

nanorms

Prediction of RNA modification stoichiometry from per-read current intensity information using KNN and KMEANS algorithms