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discussions

Repository for Frank lab related discussions

dorsal_intermediate_analysis

Rhino's analysis of multi-site dorsal and intermediate hippocampal recordings

element-deeplabcut

DataJoint Element for behavioral analysis with DeepLabCut

filterframework_to_nwb

Converts from Frank Lab Filterframework DataFormat to Neurodata Without Borders 2.0

franklab-nwb-hack

Frank Lab code demoing NWB development (e.g. at Hackathons)

franklab_mountainsort_old

MountainSort pipeline for spike sorting.

franklab_nwb_extensions

NWB extensions for Frank lab data

franklab_python_tutorial

Python tutorial

franklabnwb

Example notebook and related code to create NWB files from trodes .rec and associated files assuming franklab compatible naming system

fsgui

Feedback and stimulation gui for real time experiment control

gillespie_elife_2024

Analysis code for Gillespie et al, eLife 2024, "Neurofeedback training can modulate task-relevant memory replay rate in rats"

gillespie_neuron_2021

analysis code for Gillespie et al, Neuron 2021

hhmi-spyglass-image

Image environment to showcase HHMI/FrankLorenLab/Spyglass

jguides_2024

Jen's analysis of PFC and HPc recordings in rats

joshi_et_al_2023

Analysis code for Joshi et al 2023 Dynamic synchronization between hippocampal representations and stepping

ml_ms4alg

MountainSort v4

mountainsort4

MountainSort4 spike sorting algorithm

ndx-franklab-novela

non_local_detector

position_tools

Tools for calculating smoothed 2D position, speed, head direction

realtime_decoder

rec_to_binaries

A python package that converts SpikeGadgets rec files in the Frank lab directory format to more useable binaries with the same directory format.

rec_to_nwb

Data Migration REC -> NWB 2.0 Service

rec_to_nwb_yaml_creator

Create YAML files for rec-to-NWB Conversion

sorting-curations

holds text files with manual curation tags for spike sorting with mountainsort4

sortingview_old

Web app for viewing results of ephys spike sorting

spikeinterface

A Python-based module for creating flexible and robust spike sorting pipelines.

spiketoolkit

Python-based tools for pre-, post-processing, validating, and curating spike sorting datasets.

spyglass

Neuroscience data analysis framework for reproducible research built by Loren Frank Lab at UCSF