aav-screening

Code used in the screening for efficient AAV serotypes

awesome-single-cell

Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

biopython.github.io

Source of biopython.org website, migrated from MediaWiki

cafe_fig

A tool to extract and visualize the results of CAFE (Computational Analysis of gene Family Evolution)

catandice

Kivy smartphone app to simulate less erratic dice rolls for the Settlers of Catan card game.

catandice2

catan dice 2

data

Data shared by Martin-Villalba-lab at DKFZ, Heidelberg, Germany

dmrseq

R package for Inference of differentially methylated regions (DMRs) from bisulfite sequencing

edsb_vorlesung

epipolymorphism

A command-line tool to estimate epigenetic polymorphism from bisulfite-converted sequencing reads

episcanpy

Episcanpy: Epigenomics Single Cell Analysis in Python

gallery

Gallery of ggplot2 extensions

genomic-comparisons-in-blattodea

Genome analysis scripts

ggpointdensity

:chart_with_upwards_trend: :bar_chart: Introduces geom_pointdensity(): A Cross Between a Scatter Plot and a 2D Density Plot.

hydeout

A refreshed version of Hyde for Jekyll 3.x

insulinreceptorevo

"Reconstructed Evolution of Insulin Receptors in Insects Reveals Duplications in Early Insects and Cockroaches" - supplementary data and figures

lkremer

msa_trimmer

Straightforward & minimalistic removal of poorly aligned regions in sequence alignments.

plate_scatac-seq

A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method

prodd

Differential Detection for Label-free (LFQ) Mass Spec Data

raspberrypialarmclock

A basic radio alarm clock tool that first plays a web radio and then a buzzer. Alarm times are retrieved from Google Calendar.

scanpy

Single-cell analysis in Python. Scales to >1M cells.

scanpy_usage

Scanpy use cases.

scbs

Python package with CLI for downstream analysis of single cell methylation data.

showtree

showTree can visualize the phylogeny, protein sequences and protein domains of a gene family in one figure.

tecan

Read Absorbance Files of the Tecan Plate Reader Infinite 200

tecov

A pipeline to to determine the repeat content of genes and their neighboring regions.

ursgal

Ursgal - universal Python module combining common bottom-up proteomics tools for large-scale analysis