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analyzing_neural_time_series

python implementations of Analyzing Neural Time Series Textbook

bids2nda

A conversion tool for creating NDA compatible metadata representation from BIDS datasets.

centerforopenneuroscience.org

Website materials

cookiecutter-pypackage

Cookiecutter template for a Python package.

cosanlabtoolbox

General Analysis Functions

cosmomvpa

A lightweight multivariate pattern analysis (MVPA) toolbox in Matlab / Octave

dartbrains

This repository is a Python package with all of the functions and python libraries required for the Dartmouth fMRI Analysis Course taught by Prof Luke Chang, PhD.

energyconsumptionthesis

hypertools

A Python toolbox for gaining geometric insights into high-dimensional data

introduction-to-python

A brief overview of the Python programming language.

jepa

PyTorch code and models for V-JEPA self-supervised learning from video.

labjackpython

The offical Python module and classes for interacting with LabJack devices

meta

Planning and Collaborative Space for Executable Book Project

mr_physics

Repository to build a prototype of an interactive MR physics simulator. based on Lars Hansons CompassMR and Block-Simulator (https://github.com/larsh957/Bloch-Simulator)

mvpaemodys_analyses

Mega-analysis on the expression of neural emotion signatures in women with dysregulation and healthy controls. Contains derivative data and scripts to reproduce main analyses.

ndap-fa2018

neuro data analysis in python

neurosynth

NeuroSynth core tools

neurovault

Easy to use web database for statistical maps.

nhwgittwo

nilearn

Machine learning for NeuroImaging in Python

nipype_tutorial

Learn Nipype with these tutorial notebooks - go here to see them online -->

openbeacon

openbeacon-ng

OpenBeacon.org Active 2.4 GHz RFID tracking for nRF51822

opticka

Opticka is an object–oriented visual stimulus+experiment manager built on top of the Psychophysics toolbox (PTB) for Matlab. It runs dynamic methods-of-constants type experiments with full behavioural control (using state machine logic). It uses a class system to create flexible, simple to use stimuli using experimenter friendly units. Opticka can use an Eyelink eyetracker, Plexon Omniplex neurophysiology data collection and general TTL control using either a cheap LabJack (ms precision) or DataPixx lite (µs precision). It contains analysis routines linked to Fieldtrip for spike and LFP data parsed in terms of the experimental variables.

paper-reviewer-matcher

Linear programming solver for paper-reviewer matching and mind-matching

preprocessingfnirs

UCLA SCN lab preprocessing function for fNIRS data, collected with NIRx

psyc60_19w

psyc63

Repository of jupyter notebooks for Psyc63 Experimental Study of Behavior at Dartmouth College

pycwt

Continuous wavelet transform module for Python. Includes a collection of routines for wavelet transform and statistical analysis via FFT algorithm. This module references to the numpy, scipy and pylab Python packages.

pyneurovault

python wrapper for NeuroVault api (in dev)