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abc_dl

JAVA source code to implement the ABC-DL approach described in Mondal et al

ad3dmil

Attention Based Deep 3D Multiple Instance Learning

algorithmsbypython

算法/数据结构/Python/剑指offer/机器学习/leetcode

annotated_deep_learning_paper_implementations

🧑‍🏫 60 Implementations/tutorials of deep learning papers with side-by-side notes 📝; including transformers (original, xl, switch, feedback, vit, ...), optimizers (adam, adabelief, sophia, ...), gans(cyclegan, stylegan2, ...), 🎮 reinforcement learning (ppo, dqn), capsnet, distillation, ... 🧠

bayesmcclust

:exclamation: This is a read-only mirror of the CRAN R package repository. bayesMCClust — Mixtures-of-Experts Markov Chain Clustering and Dirichlet<U+000a>Multinomial Clustering

biotech

A project for Bioinformations

cherry

Host prediction

cl4phi

dashing

Fast and accurate genomic distances using HyperLogLog

data-structures-and-algorithms-in-c

所有基础数据结构和算法的纯C语言实现，如各自排序、链表、栈、队列、各种树以及应用、图算法、字符串匹配算法、回溯、并查集等，献丑了

dataminingalgorithm

数据挖掘18大算法实现以及其他相关经典DM算法

ddp-practice

A demo of deep learning with PyTorch DistributedDataParallel module.

deep-learning-21-examples

《21个项目玩转深度学习———基于TensorFlow的实践详解》配套代码

deeplearning.ai

该存储库包含由deeplearning.ai提供的相关课程的个人的笔记和实现代码。

deeplearningzerotoall

TensorFlow Basic Tutorial Labs

dml

D's Machine Learning is a machine learning toolkit for python,focus on rightness but efficiency

download-and-reannotation-of-phage-genomes

A snakemake workflow for downloading and reannotating phage genomes

efficient-dl-systems

Efficient Deep Learning Systems course materials (HSE, YSDA)

evomil

Prediction of virus-host association using protein language models and multiple instance learning

fcn-mil

Fully convolutional network for weakly supervised semantic segmentation

gnn_ppi

Codes and models for the paper "Learning Unknown from Correlations: Graph Neural Network for Inter-novel-protein Interaction Prediction".

hgp-hi-c

Hi-C human gut microbiome

high-ppi

histomorphological-phenotype-learning

Corresponding code of 'Quiros A.C.+, Coudray N.+, Yeaton A., Yang X., Chiriboga L., Karimkhan A., Narula N., Pass H., Moreira A.L., Le Quesne J.*, Tsirigos A.*, and Yuan K.* Self-supervised learning discovers novel morphological clusters linked to patient outcome and molecular phenotypes. 2022'

hotspot

HOTSPOT is a hierarchical host prediction tool for plasmid contigs using Transformer.

iciar2018

Two-Stage Convolutional Neural Network for Breast Cancer Histology Image Classification. ICIAR 2018 Grand Challenge on BreAst Cancer Histology images (BACH)

ilmf-vh

Kernelized Logistic Matrix Factorization based on Similarity Network Fusion for Predicting Virus-host Association

infection_network_reconstruction

inphared

Providing up-to-date phage genome databases, metrics and useful input files for a number of bioinformatic pipelines.