Li Shen's Projects
Bayesian network learning of gene regulatory rules
A Boolean network model to predict the phenotype of a biological network
A Keras implementation of CapsNet in NIPS2017 paper "Dynamic Routing Between Capsules". Now test error = 0.34%.
Public facing notes page
Digital Database for Digital Mammography Software
This is a utility written by me to greatly simplify downloading, converting, viewing and extracting annotations from the Digital Database for Screening Mammography (DDSM) database available here: http://marathon.csee.usf.edu/Mammography/Database.html
This is an example of a DM Challenge submission in Python.
My entry to the DREAM2016 digital mammography challenge for breast cancer diagnosis
Deep Learning to Improve Breast Cancer Detection on Screening Mammography
Computer aided detection using Faster-RCNN
Keras + Hyperopt: A very simple wrapper for convenient hyperparameter optimization
Distributed Asynchronous Hyperparameter Optimization in Python
I have made contributions in this forked version and merged all commits back to the original repository
Image Registration Algorithms
Deep Learning library for Python. Convnets, recurrent neural networks, and more. Runs on Theano or TensorFlow.
Dimension-reduction based logistic regression algorithm used to predict cancer types.
Machine learning education
Gene clustering based on a mixture model of joint probabilistic distribution of array signals and DNA sequences
A multi-class classification strategy using error-correction output-coding.
A collection of my contributions to open-source machine learning community
Python wrappers for dicom conversion.
Scripts for Ubuntu/Debian
Forecasting S&P500 log returns with machine learning
A Tensorflow Implementation of Spatial Transformer Networks
Implementation of spatial transformer networks (STNs) in keras 2 with tensorflow as backend.