lintian0616 Goto Github PK

analyticedge

atac-seq

awesome-clonality

A curated list of awesome clonality and tumor heterogeneity resources

bica

custom codes used for BICA paper

carpools

Exploratory data analysis for pooled CRISPR/Cas9 screens

cbioportaltutorial

Note from MSKCC cBioPortal Workshop

clearmap

ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.

crisphiermix

crispr_screening

Computational Part of CRISPR Screening

crispranalyzer

CRISPRAnalyzeR: interactive analysis, annotation and documentation of pooled CRISPR screens

crispresso2

Analysis of deep sequencing data for rapid and intuitive interpretation of genome editing experiments

cv

Lin Tian's CV

data_science_in_biology

projects using galaxy, python, linux command line to analyze sequencing data

fastpca

flowcytometry_tsne

git_configuration

gossamer

Gossamer bioinformatics suite

kc_plasticity

Processed data and codes of bioinformatic analysis for the Kupffer cell plasticity project

l1ktools

mongo

lintian0616.github.io

peakzilla

Peakzilla is a self-learning algorithm to identify transcription factor binding sites from ChIP-seq data. I would be very happy if you try it and provide me with feedback, so I can improve peakzilla and make you a happier user. Please feel free to send an e-mail to: [email protected]

scpdac

R code used to analyze single cell PDAC data

seqtk

Toolkit for processing sequences in FASTA/Q formats

vcflib

a simple C++ library for parsing and manipulating VCF files, + many command-line utilities

vesselnormalization

This repository contains the source codes for the manuscript being reviewed.

vesselquantify_ihc

Vessel density, length, area quantification for immunohistochemistry images