Lin Tian's Projects
A curated list of awesome clonality and tumor heterogeneity resources
custom codes used for BICA paper
Exploratory data analysis for pooled CRISPR/Cas9 screens
Note from MSKCC cBioPortal Workshop
ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.
Computational Part of CRISPR Screening
CRISPRAnalyzeR: interactive analysis, annotation and documentation of pooled CRISPR screens
Analysis of deep sequencing data for rapid and intuitive interpretation of genome editing experiments
Lin Tian's CV
projects using galaxy, python, linux command line to analyze sequencing data
Gossamer bioinformatics suite
Processed data and codes of bioinformatic analysis for the Kupffer cell plasticity project
mongo
Peakzilla is a self-learning algorithm to identify transcription factor binding sites from ChIP-seq data. I would be very happy if you try it and provide me with feedback, so I can improve peakzilla and make you a happier user. Please feel free to send an e-mail to: [email protected]
R code used to analyze single cell PDAC data
Toolkit for processing sequences in FASTA/Q formats
a simple C++ library for parsing and manipulating VCF files, + many command-line utilities
This repository contains the source codes for the manuscript being reviewed.
Vessel density, length, area quantification for immunohistochemistry images