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ailearning

AiLearning: 机器学习 - MachineLearning - ML、深度学习 - DeepLearning - DL、自然语言处理 NLP

alexhwoods.com

All code and data relating to blog posts will be in this repository. View blog at alexhwoods.com

auto-complete

Emacs auto-complete package

bio7

bio7

bookdown-crc

A minimal example of using bookdown to write a book for Chapman & Hall/CRC

boot-camps

Software Carpentry boot camp material

cheatsheets

RStudio Cheat Sheets

conda

OS-agnostic, system-level binary package manager and ecosystem

dada2

Accurate sample inference from amplicon data with single nucleotide resolution

data.table

R's data.table package extends data.frame. More info:

deepinterests

深度有趣

eca-bioinf-handbook

Lecture notes/book in progress on computing for conservation genomics

ess

Emacs Speaks Statistics: ESS

fastqc

csf fork of fastqc for usage on selected reads of unaligned bam file

foam

ggplot2

An implementation of the Grammar of Graphics in R

ggplot2-exts.github.io

A list of ggplot2 extensions

khmer

In-memory nucleotide sequence k-mer counting, filtering, graph traversal and more

knitr-examples

a collection of knitr examples

mothur

Welcome to the mothur project, initiated by Dr. Patrick Schloss and his software development team in the Department of Microbiology & Immunology at The University of Michigan. This project seeks to develop a single piece of open-source, expandable software to fill the bioinformatics needs of the microbial ecology community.

nsfc_conclusion_downloader

A tool to Download PDF format conclusion from http://output.nsfc.gov.cn/

ntu-hsuantienlin-ml

:book: **大学林轩田机器学习笔记

pandas-cookbook

Recipes for using Python's pandas library

phyloseq

phyloseq is a set of classes, wrappers, and tools (in R) to make it easier to import, store, and analyze phylogenetic sequencing data; and to reproducibly share that data and analysis with others. See the phyloseq front page:

picrust2

Code, unit tests, and tutorials for running PICRUSt2

pydata-book

Materials and IPython notebooks for "Python for Data Analysis" by Wes McKinney, published by O'Reilly Media

pyenv

Simple Python version management

qiime

Quantitative Insights Into Microbial Ecology (QIIME): Official repository for software and unit tests

qiime-default-reference

Default reference data files for use with QIIME.

r-apsim

General APSIM utility package for R