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5pseq_python

abi

atlas-of-mrna-translation-and-decay-for-bacteria

Scripts used in the paper by Huch, Nersisyan et al. Nat. Micr. 2023 RNA translation and decay mapped in 96 bacterial species

bioinf-2020

An introductory course to computational biology focusing on genomics and systems biology.

bioinf_challenges

computel

Compute mean telomere length from Whole Genome Sequencing data.

cykeggparser

fivepseq

An application for analysis of 5′ endpoints distribution in RNA sequencing datasets. This is particularly useful for techniques that capture 5′ monophosphorylated RNAs, such as 5PSeq, PARE-seq or GMUC. It may also be useful for ribosome profiling datasets and alike.The main workflow of fivepseq is intended for downstream analysis of alignment files to describe the distribution of 5′ endpoints of reads relative to translation start and stop sites, as well as relative to amino acids or codons. It also computes frame preference of 5′ endpoint distribution and captures periodicity patterns.

gonl_tqtl

Telomere length inheritance in the Dutch population

psfc

tmm

PSFC-dependent app for validation of TMM networks