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bad_mutations

Deleterious mutation prediction pipeline

bioinformatic_scripts

common bioinformatic scripts

bioinformatics123

biopython

Official git repository for Biopython (converted from CVS)

biotools

A list of useful bioinformatics resources

coral-variation

Looking at genetic variation 6 Acropora tenuis larvae. Following the CBC-Uconn variant calling tutorial

deleterious-mutations-polyploidy

This repository serves as a host for the paper describing how deleterious mutations accumulate following polyploidization in Gossypium.

easy353

Easy353 is a tool for recovering Angiosperms353 gene set.

eggnog-mapper

Fast genome-wide functional annotation through orthology assignment

gatk

Official code repository for GATK versions 4 and up

multiqc

Aggregate results from bioinformatics analyses across many samples into a single report.

ngs-analysis

二代测序数据分析

orthofinder

Accurate inference of orthologous gene groups made easy. "OrthoFinder: solving fundamental biases in whole genome comparisons dramatically improves orthologous gene group inference accuracy"

python

rush

A cross-platform command-line tool for executing jobs in parallel

samtools

Tools (written in C using htslib) for manipulating next-generation sequencing data

scores

seurat-wrappers

Community-provided extensions to Seurat

sniffles

Structural variation caller using third generation sequencing

software

some software need to be installed by yourself

standard-raxml

svcollector

Method to optimally select samples for validation and resequencing

terminal

The new Windows Terminal, and the original Windows console host -- all in the same place!

wgsc