Comments (3)
But the kc-py2.py results are wrong.
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@lh3 Oh, my bad! There is an indent issue... I changed tabs in your code to 4 spaces and that caused a problem in a for loop. In my previous experience, python-gzip is slower than the gzip tool. Now it turns out to be quite slow now. Issue closed :)
from kmer-cnt.
Thanks for investigating this. I just hate this SPACE vs TAB thing. It has bitten me a few times...
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Related Issues (9)
- Is there a fastest way to ouput the unique kmer sequence ? not only output the kmer count HOT 1
- Any plan on adding a go implementation? HOT 1
- Speedup from kc-cpp2.cpp to kc-c1.c HOT 4
- Problem with 32mers
- Can the codes be compiled and run on Windows system?
- kc-c[1-4] and yak-count not working when k=32.
- Link to dataset down?
- hash64 for hash table ensemble
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