lewlin Goto Github PK

4dsurvival

Deep learning cardiac motion analysis for survival prediction

a-large-image-tiler

(Python3, PyQt5) GUI software to tile large images. Designed to image 96-well plates used in wet labs.

brainmap

Allen Brain Atlas utilities, parsers and data structures

cairosvg

CairoSVG is a SVG converter based on Cairo. It can export SVG files to PDF, PostScript and PNG files.

chunkwm

Tiling window manager for macOS based on plugin architecture

classification_models

Classification models trained on ImageNet. Keras.

coursera

Source of Coursera online projects

datasets-analysis

My analyses/ML predictions for common datasets publicly available from the Internet

deep_reinforcement_learning_course

Implementations from the free course Deep Reinforcement Learning with Tensorflow

disentangling-pathogens-sm

Supplementary Material (R notebook) for the paper "Disentangling bacterial invasiveness from lethality in an experimental host-pathogen system"

dotfiles

Snow repository for OSX dotfiles

few-shot

Repository for few-shot learning machine learning projects

iciar2018

Two-Stage Convolutional Neural Network for Breast Cancer Histology Image Classification. ICIAR 2018 Grand Challenge on BreAst Cancer Histology images (BACH)

keras-applications

Reference implementations of popular deep learning models.

keras-contrib

Keras community contributions

lewlin.github.io

My academic webpage

lewlin.github.iold

My personal/academic webpage

material_darker_mpl

matplotlib style file for the material darker theme

models

Models and examples built with TensorFlow

mousebrainatlas

A system for building mouse brain atlas from histology series

movable-items

(Python, PyQt5) Show how to implement movable objects in PyQt w/o using the itemIsMovable flag.

my-python

Cools things about Python that surprised me, coming from a C background

nmfreg_tutorial

A tutorial on NMFreg applied to cerebellum data.

novosparc

openstreetmap-website

The Rails application that powers OpenStreetMap

scanpy

Single-Cell Analysis in Python. Scales to >1M cells.

score_sde

Official code for Score-Based Generative Modeling through Stochastic Differential Equations (ICLR 2021, Oral)

score_sde_pytorch

PyTorch implementation for Score-Based Generative Modeling through Stochastic Differential Equations (ICLR 2021, Oral)

segmentation_models

Segmentation models with pretrained backbones. Keras.

stochastic-multidimensional-lv

Stochastic implementation of a Lotka-Volterra competition model extended to multidimensional niche spaces (published in 10.1103/PhysRevE.91.052107)