leiferlab Goto Github PK
Name: Leifer Lab @ Princeton University
Type: Organization
Bio: Probing the neural dynamics of C. elegans during behavior.
Location: Princeton, New Jersey, USA
Name: Leifer Lab @ Princeton University
Type: Organization
Bio: Probing the neural dynamics of C. elegans during behavior.
Location: Princeton, New Jersey, USA
Implementations of the robust point set registration algorithm described in the paper "Robust Point Set Registration Using Gaussian Mixture Models", Bing Jian and Baba C. Vemuri, IEEE Transactions on Pattern Analysis and Machine Intelligence, 2011, 33(8), pp. 1633-1645.
Xinwei's pipeline for high mag neuron segmentation
Interprocess C API / DLL for getting data in and out of the mindcontrol application in realtime.
A compact C library to share data between processes on Windows. Fast. Simple
Reproducing the calculations in Kunert et al., PRE 89 052805 (2014)
Lab homepage
Source code associated with Liu et al "Temporal processing and context dependency in C. elegans response to mechanosensation"
Library of useful Matlab Utilities
Closed-loop computer vision software to track and deliver patterned illumination to freely moving C. elegans as part of the CoLBeRT instrument.
MATLAB scripts to read in YAML output created by MindControl software.
Code accompanying Nguyen JP, Linder AN, Plummer GS, Shaevitz JW, Leifer AM (2017) Automatically tracking neurons in a moving and deforming brain. PLoS Comput Biol 13(5): e1005517.
analysis for OSA recordings
This repository contains code and visualizations needed to reproduce the results presented in Hallinen et al, "Decoding locomotion from population neural activity in moving C. elegans," eLife, 2021.
Francesco's LabView code for pump-probe experiments. www.github.com/leiferlab/pump-probe-acquisition#francescos-labview-code README at the bottom of the long list of files, which are actually well organized in the LabView project pump-probe.lvproj
Signal propagation atlas libraries, Randi et al. 2022
Savitzky-Golay filters
Data analysis for Gauthey et al. 2024.
Matlab implementation of E-test for comparing poisson means. Based on Krishnamoorthy, K and Thomson, J. (2004)
MATLAB GUI for tracking features in images, such as neurons.
Collection of software components used in Nguyen et al 2015
Handling of small brains
Data model for whole brain recordings
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.