leiferlab Goto Github PK

Name: Leifer Lab @ Princeton University

Type: Organization

Bio: Probing the neural dynamics of C. elegans during behavior.

Location: Princeton, New Jersey, USA

Leifer Lab @ Princeton University's Projects

Implementations of the robust point set registration algorithm described in the paper "Robust Point Set Registration Using Gaussian Mixture Models", Bing Jian and Baba C. Vemuri, IEEE Transactions on Pattern Analysis and Machine Intelligence, 2011, 33(8), pp. 1633-1645.

highmagneuron

Xinwei's pipeline for high mag neuron segmentation

internal.mindcontrolapi

Interprocess C API / DLL for getting data in and out of the mindcontrol application in realtime.

interprocess

A compact C library to share data between processes on Windows. Fast. Simple

kumar-molecular-mechanism

kumar-sensorimotor-integration

kunertpre2014

Reproducing the calculations in Kunert et al., PRE 89 052805 (2014)

leiferlab.princeton.edu

Lab homepage

linderthesiscode

liu-closed-loop-code

liu-temporal-processing

Source code associated with Liu et al "Temporal processing and context dependency in C. elegans response to mechanosensation"

matlab-base-utils

Library of useful Matlab Utilities

mindcontrol

Closed-loop computer vision software to track and deliver patterned illumination to freely moving C. elegans as part of the CoLBeRT instrument.

mindcontrolaccessutils

MATLAB scripts to read in YAML output created by MindControl software.

nerveclustering

Code accompanying Nguyen JP, Linder AN, Plummer GS, Shaevitz JW, Leifer AM (2017) Automatically tracking neurons in a moving and deforming brain. PLoS Comput Biol 13(5): e1005517.

osaanalysis

analysis for OSA recordings

predictioncode

This repository contains code and visualizations needed to reproduce the results presented in Hallinen et al, "Decoding locomotion from population neural activity in moving C. elegans," eLife, 2021.

pump-probe-acquisition

Francesco's LabView code for pump-probe experiments. www.github.com/leiferlab/pump-probe-acquisition#francescos-labview-code README at the bottom of the long list of files, which are actually well organized in the LabView project pump-probe.lvproj