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alica

Automated Laser Illumination Control Algorithms

alica_acpack

Analyzer and controller implementations for ALICA.

alica_interfaces

Interfaces to the primary components of ALICA.

deep-events

Scripts and notebooks for annotation and handling of phase and fluorescent data for preparation and training of neural networks for event detection.

defcon

Single molecule density estimation by fully convolutional neural networks

defcon-imagej

An ImageJ plugin for DEFCoN, the fluorescence spot counter based on fully convolutional neural networks.

eda

Tools for adaptive imaging in the LEB-EPFL

eda-napari

event-driven-acquisition plugin for napari

eda_plugin

Plugin for event-driven acquisition to be used with Micro-Manager

fifi_parts_list

The parts list for FIFI, the flat-field illuminator for large field of view localization microscopy.

ht-storm

HT-STORM project management

imageinjector

A simple plugin for injecting images into Micro-Manager's demo camera.

imajin

Tools to simulate optics and microscopy experiments.

isim

iSIM control and analysis software

kpal

Hardware control for experimental science

leb-clustering

Clustering and analysis software for the Laboratory of Experimental Biophysics, EPFL

led-array-datasets

mitosplit-net

Detection of mitochondrial divisions with neural networks

mitoworks

Collection of MATLAB functions for analysis of mitochondrial shape and dynamics.

mm-docker

Dockerfiles for building Micro-Manager components.

napari-eda-highlight-reel

project_layout

ptycho

Hardware control and image analysis code for Fourier ptychography.

pymm-eventserver

Event Server to receive Micro-Manager events in python via zeromq

python-isim-control

Python Control Interface for the iSIM at LEB-EPFL

rats

High performance probabilistic state machine simulator

sass

Toolkit for simulating real-time control systems for super-resolution microscopy.

sdada

Shape Dynamics Automated Data Analysis

stormchaser

DEMO 3D Double-Helix localization software

stormlikechains

Generate polymer random walks for modeling localization microscopy experiments.