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bioscripts

chip-ap

An Integrated Analysis Pipeline for Unbiased ChIP seq Analysis

cpu-mem-usage-monitor

Very simple bash and gnuplot script to monitor cpu and memory usage in graph

dge_workshop

eclip

eclipdemux

demultiplex utility for eclip raw fastq files (process eclip barcodes and ramdomers)

github-as-a-database

htsbauer

Parsing Bauer Center Sequencing using HMS Orchestra

indrops

Pipeline for processing inDrops sequencing data

init.nvim

An Opinionated Neovim Config for the Minimalists

jupyter-tutorial

Short tutorial on jupyther, pandas, matplotlib and their capabilities

markdown_readme

Markdown - you can mark up titles, lists, tables, etc., in a much cleaner, readable and accurate way if you do it with HTML.

merge_peaks

Pipeline for using IDR to produce a set of peaks given two replicate eCLIP peaks

myprompts

nvim

init.vim config file with coc-settings.json for coc.nvim

oh-my-bash

A delightful community-driven framework for managing your bash configuration, and an auto-update tool so that makes it easy to keep up with the latest updates from the community.

privategpt

Interact privately with your documents using the power of GPT, 100% privately, no data leaks

pybind11

Seamless operability between C++11 and Python

rcbiooptionalemail

scan2

SCAN2 is a somatic SNV and indel genotyper for single cells amplified by Primary Template-Directed Amplification (PTA)

scte

singularity-def-files

definition files and wrapper scripts used by NIH HPC staff to install user-facing apps on the Biowulf cluster

smartslurm

snakemake-converter

This is the development home of the workflow management system Snakemake. For general information, see

tarsmallfiles

To decrease number of small file, keep the folder structure, tar all files less than 1G

test-conda