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acp-dl

ACP-DL: a deep learning long short-term memory model to predict anticancer peptides using high efficiency feature representation

alphapeptdeep

deep learning, mass spec, proteomics

attention_network_with_keras

An example attention network with simple dataset.

auto-pytorch

Automatic architecture search and hyperparameter optimization for PyTorch

bioinformation-lab

boltzmatch

BoltzMatch is machine-learning-based peptide-spectrum-matching scoring method for spectrum identification in tandem mass spectrometry, shotgun proteomics.

cnn-autoencoder

Multi task learning with CNN + AutoEncoder in pytorch

cnn_autoencoder

CNN Autoencoder using pytorch

convnet-drawer

Python script for illustrating Convolutional Neural Networks (CNN) using Keras-like model definitions

cplusplusthings

C++那些事

deep-belief-network-with-pytorch

An implementation of Deep Belief Network in PyTorch

deep-learning-papers-reading-roadmap

Deep Learning papers reading roadmap for anyone who are eager to learn this amazing tech!

deep-svdd-pytorch

A PyTorch implementation of the Deep SVDD anomaly detection method

deepbelief

Code for training and evaluating restricted Boltzmann machines (RBMs) and deep belief networks (DBNs).

deepdia

Using deep learning to generate in silico spectral libraries for data-independent acquisition analysis. You can also use the online service powered by Omicsolution.

deeplearning-biology

A list of deep learning implementations in biology

deeplearning-proteomics

A deep learning project for proteomics

deepnovo

Protein Identification with Deep Learning

deeprtplus

Deep Learning for Peptide Retention Time Prediction

draw_convnet

fnn

fNN is a command line tool for predicting secondary structure of proteins using their primary sequence (in FASTA format).

instanovo

keras-contrib

Keras community contributions

latex

Fibeamer for the Faculty of Informatics at the Masaryk University in Brno

lihang-code

《统计学习方法》的代码实现

machine-learning_zhouzhihua

Exercises answers to the book "machine-learning" written by Prof. Zhou Zhihua of Nanjing University

machinelearning_zhouzhihua_problemsets

Exercises answers to the book "machine-learning" written by Zhou Zhihua。周志华《机器学习》课后习题，个人解答。各算法都拿numpy和pandas实现了一遍

models

Models and examples built with TensorFlow

phenopredict21

Command line tool to predict phenotype from VCF (gets models from pheno-server-21)

prosit

Prosit offers high quality MS2 predicted spectra for any organism and protease as well as iRT prediction. When using Prosit is helpful for your research, please cite "Gessulat, Schmidt et al. 2019" DOI 10.1038/s41592-019-0426-7