Comments (2)
Hi, I made a quick change in a new branch GeneLength. Could you test if the result is what you're expected ?
You can make this to install a local version of ppanggolin with the new information :
#if you already clone ppanggolin git
cd path/to/ppanggolin/directory
#if you don't
git clone https://github.com/labgem/PPanGGOLiN.git
cd PPanGGOLiN
#After
git fetch origin
git checkout GeneLength
pip install .
# Now you can test the command, it should be the 1.2.78 version of PPanGGOLiN
If you have any trouble or more suggestion, don't hesitate to post here.
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Closing at it's now in master, and soon in the next release
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Related Issues (20)
- less genes clustered than genes in the pangenome HOT 7
- PPanGGOLiN taking too much time to run on large collection of genomes HOT 6
- Error when re-partitionning a .h5 file obtained from the panmodule subcommand HOT 1
- Extract gene IDs located within RGPs HOT 4
- Only extract gene families within RGPs HOT 5
- Attribute error when draw spots HOT 2
- Deprecated NumPy HOT 5
- Identity/coverage threshold for species/genus? HOT 1
- Spot Plot Error HOT 2
- PPanGGOLiN hangs when partitioning does not work HOT 11
- doubt about Circular contig identifiers HOT 4
- Non-deterministic clustering (possibly due to defragmentation) HOT 11
- Regions of Genome Plasticity HOT 2
- Position column in pangenomeGraph.json file HOT 4
- Spots - way to get the flanking genes? HOT 3
- Error in WriteBinaries.py HOT 17
- Searching for spots using the gene as a query HOT 8
- drawing some spot is not working ValueError HOT 9
- Plastic regions HOT 1
- How to extract the genome location of the spots HOT 2
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