Enhance drawing spot in plot about ppanggolin HOT 3 CLOSED

Hi,
The latest commit adresses the first point. for each drawn spot there will an additional file 'spot_y_identical_rgps.tsv' (y being the spot id) written indicating RGP ids, and genomes those RGP are found in, that are identical to one of the drawn RGP.

The format is as follow:

• representative RGP id
• representative genome name in which the RGP is
• identical RGP
• genome name in which the identical RGP is

The functionality has been tested but not heavily, so bugs might still exist.

I'll do more testing and address the second problem soonish hopefully

Adelme

from ppanggolin.

Thanks a lot for the ideas.

Detecting the necessary margin could be something doable, and for the 2X, 3X... things in the plot I agree that not knowing which RGPs or genomes are behind can be quite unpractical.

from ppanggolin.

Hi,
The old 'spot drawing' using R was removed and replaced by an option in 'ppanggolin draw' which draws interactive plots of spots. Those spots can be modified by users relatively easily, so the problems with margins or labels should not exist (and if they do, it should be possible to address it by changing some parameters directly in the interactive plots).
Adelme

from ppanggolin.