Comments (4)
Not using a MacOS, but I faced this issue during installation of some other tool (gifrop) via conda.
I believe its due to channel priority that an incompatible version of rpy2 seems to get installed causing either library mismatch or installation failure.
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Oh alright, that's good to know thank you !
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If somebody has a message such a this one when using ppanggolin (and ends up reading this issue), know that it is very likely an installation issue. Changing versions or channel origin of rpy2 might help. In any case I can't do much about it.
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latest commits have removed the dependencies with rpy2 and R, so this should not happen with the newer versions.
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Related Issues (20)
- less genes clustered than genes in the pangenome HOT 7
- PPanGGOLiN taking too much time to run on large collection of genomes HOT 6
- Error when re-partitionning a .h5 file obtained from the panmodule subcommand HOT 1
- Extract gene IDs located within RGPs HOT 4
- Only extract gene families within RGPs HOT 5
- Attribute error when draw spots HOT 2
- Deprecated NumPy HOT 5
- Identity/coverage threshold for species/genus? HOT 1
- Spot Plot Error HOT 2
- PPanGGOLiN hangs when partitioning does not work HOT 11
- doubt about Circular contig identifiers HOT 4
- Non-deterministic clustering (possibly due to defragmentation) HOT 11
- Regions of Genome Plasticity HOT 2
- Position column in pangenomeGraph.json file HOT 4
- Spots - way to get the flanking genes? HOT 3
- Error in WriteBinaries.py HOT 17
- Searching for spots using the gene as a query HOT 8
- drawing some spot is not working ValueError HOT 9
- Plastic regions HOT 1
- How to extract the genome location of the spots HOT 2
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