Name: Kaiyu (Rossmann) Qiu
Type: User
Company: Max Planck Institute for Biology
Bio: PhD student at Max Planck Institute for Biology (Lupas lab) | Interested in protein evolution and origin of life
Twitter: 21qiu
Location: Tuebingen
Blog: https://sites.google.com/view/kaiyuhome/homepage
Kaiyu (Rossmann) Qiu's Projects
A convolutional neural network for classifying binding pockets based on spatial and chemical information extracted from the pockets.
Explore protein fold space with deep generative models
This repository contains the code for our manuscript - 'A comprehensive fitness landscape model reveals the evolutionary history and future evolvability of eukaryotic cis-regulatory DNA sequences'
A Python API for computing evolutionary paths across genotype-phenotype maps and clustering of genotype-phenotype maps.
Jupyter notebooks for Genetics paper, "Detecting high-order epistasis in nonlinear genotype-phenotype maps"
Exploiting sequence representations derived from protein language models for repeat identification
Calculate Root-mean-square deviation (RMSD) of two molecules, using rotation, in xyz or pdb format