Comments (5)
Hi Chinmaya,
it looks like you made breaking changes to the Makefile.
Prosit assumes that within the Docker container your model is at "/root/model_spectra/".
This is what happens in: https://github.com/kusterlab/prosit/blob/master/Makefile#L18
In your case it maps your MODEL_SPECTRA folder to /root/csbm/prosit/model_spectra
.
The easiest way to prevent this error is to revert your changes made to your Makefile (and use our default version). Another option would be to change default paths inside the code, but I would not recommend that, because it may likely break other things.
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from prosit.
Please understand that we cannot debug changes to our code that you made individually and that we don't have access to. We can only provide support for the published code as is.
Also please read and follow the steps described in the README carefully and refrain from making changes to the code or your root directory:
- Download the fragmentation and irt model (all files provided: config model and weight files) and save same somewhere. Let's assume the paths to those directories are
/path/to/fragmentation_model/
and/path/to/irt_model/
, respectively. - Use the make server command
make server MODEL_SPECTRA=/path/to/fragmentation_model/ MODEL_IRT=/path/to/irt_model/
The error you posted states that your model_spectra folder does not include a config.yml.
If the config.yml is in that folder with this exact name, the error will be different.
from prosit.
from prosit.
Hello both,
the issue is that in some of the Figshare pre-trained model folders, you guys accidentally use "model.yaml" for the extension instead of "model.yml" just change that using the mv or rename command in Linux. Then rerun make server... and problem solved.
Cheers!
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