Name: Kussell Lab at New York University
Type: Organization
Bio: We combine theoretical biophysical approaches with experiments and bioinformatics to explore systems that exhibit complex, population-level phenomena.
Location: 12 Waverly Place, New York, 10003
Blog: http://www.evophys.org/KussellLab/Research.html
Kussell Lab at New York University's Projects
Generating core-gene alignments from assemblies.
Bam file filter
An example for mcorr
An example for mcorr
forward population simulations with selection and recombination
biogo high throughput sequencing repository
Inferring bacterial recombination rates from large-scale sequencing datasets.
Hierarchical clustering using mcorr
Example data for mcorr
Align SRAs to pangenome FASTA file generated by Roary
A GO package for population simulation with horizontal gene transfer
Mapping reads to the reference genome to construct consensus genomes and generate alignments
Using correlated substitutions to infer recombination rates in RNA viruses
Example workflows for using viral-mcorr to infer recombination rates for RNA viruses
Example workflow for aligning viral genomes for use with viral-mcorr using sars-like coronaviruses