Name: Konrad Stawiski MD PhD
Type: User
Company: Medical University of Lodz, Poland
Bio: Radiation oncologist, data scientist, bioinformatician. @ Med Uni Lodz ➡️ DFCI (Mouw Lab)
Twitter: KonradStawiski
Location: Łódź, Poland
Blog: http://link.konsta.com.pl/cv
Konrad Stawiski MD PhD's Projects
My PhD work
Automated cryptocurrency trading bot
Simple bulk sms application for Android written in Xamarin C#
GATK RNA-Seq Variant Calling in Nextflow
DeepSurv is a deep learning approach to survival analysis.
Running NGS computing demanding applications, e.g reads mapping and counting, wrapped in docker containers.
A Tidy Framework to Hack Gene Expression Signatures for Bladder Cancer
R scripts and helpers in the analysis
HippoHelper: Clinically accessible CT-based only delineation of hippocampus using machine learning – a pilot study.
A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter) and mouse deconvolution methods
A new tool to predict early-stage bladder cancer recurrence and progression. The application uses advanced artificial intelligence to combine state-of-the-art scales, outperforms them, and is freely available online.
Chat with your documents offline using AI.
Automatically exported from code.google.com/p/marlon-tools
Environment, docker-based application and R package for biomarker signiture selection (feature selection) from high-throughput experiments and other. Initially developed for miRNA-seq (small RNA), RNA-seq and qPCR.
Neurexam (Badanie Neurologiczne by Konrad Stawiski) - interactive neurological examination assistant and electronic health record.
Shiny Complex App framework with OmicSelector for all purposes
OmicSelector - Environment, docker-based application and R package for biomarker signiture selection (feature selection) & deep learning diagnostic tool development from high-throughput high-throughput omics experiments and other multidimensional datasets. Initially developed for miRNA-seq, RNA-seq and qPCR.
IRIC submodule of OmicSelector
PancreApp: innovative approach to computational individualization of nutritional therapy in chronic gastrointestinal disorders.
Predict the probability of relapse or reccurence (disease-free survival) after adjuvant or salvage radiation therapy for prostate cancer.
R for data science
Version of RStudio Server with OmicSelector and other usefull packages for NGS analysis.
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
Workspace for data science projects and NGS pipelines. Contains RStudio, Jupyter Notebook, VSCode and file manager. Can connect to Tailscale network to bypass firewalls.
A small-RNA sequencing analysis pipeline
Somatic variant calling workflow for tumor-only NGS