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advent-of-code-2018

advent-of-code-2023

Advent of Code 2023

aoc-2019-rust

Advent of Code 2019

biocontext

JSON-LD Contexts for Bioinformatics Data

biographer

Network generator for biological terms

biolink-api

API for linked biological knowledge

biolink-model

Schema and generated objects for biolink data model and upper ontology

deeplearningfornlpinpytorch

An IPython Notebook tutorial on deep learning for natural language processing, including structure prediction.

dipper

Data Ingestion Pipeline for SciGraph

dippercache

Prefetch tens of gigs of files & provide more robust update info downstream

edgenormalization

A service for producing relationships compliant with the biolink model

fogo

gitter-log

Utility for fetching gitter chat data (messages, metadata)

golr-loader

Convert SciGraph queries into json that can be loaded by Golr

kgx

KGX is a Python library for exchanging Knowledge Graphs

monarch-app

Monarch web application and API

monarch-cypher-queries

monarch-ontology

Top level monarch importer ontology

monarch-ui

A modern web UI for revealing and understanding Monarch Initiative information.

monarch_ontology_data

Repo for generating monarch data dependencies like the one used by exomiser

mybiocaddie

test for biocaddie-gym

nameresolution

ncbitaxon

Build for NCBITaxon

nlp-eval

Evaluation of NER approaches in Monarch

nodenormalization

Service that produces Translator compliant nodes given a curie

ontobio

python library for working with ontologies and ontology associations

phenogrid

The phenogrid widget

phenopacket-python

phenotypr-body

plater