Khushbu Patel's Projects
Public repository for the R-Ladies Philly & JAT datathon on "Exploring judicial patterns in Philadelphia courts"
Shiny tips & tricks for improving your apps and solving common problems
Variant calling pipeline for genomic data analysis
useful bash one-liners and scripts
snakelike workflow for chipseq
Scripts to run differential expression analysis using DESeq2 package
scripts that uses tools to deconvolute immune cells types from bulk RNA-Seq data
Scripts using GEOquery package to fetch expression matrices and phenotypic data associated with GSE datasets
LYVE-SET, a method of using hqSNPs to create a phylogeny, especially for outbreak investigations
Scripts for sincle cell multiome analysis
CHOP project template
Miscellaneous R script to wrangle data and generate visualizations
RSEM: accurate quantification of gene and isoform expression from RNA-Seq data
Working example scripts to implement small tricks in Shiny app