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Kay Oliver Schink's Projects

chisq_test_wrapper icon chisq_test_wrapper

A friendly, automated chi-square test function which takes care of post-hoc tests and multiple comparisons.

comdet icon comdet

ImageJ plugin detecting and colocalizing particles of given size (vesicles, dots, etc on biological microscopy images)

daisycorrection icon daisycorrection

Code used in DAISY to correct astigmatism data using the SAF reference

jip4 icon jip4

Data analysis scripts for Tan et al, 2021

libmultiviewnative icon libmultiviewnative

Native Implementation (CPU & GPU) of the Iterative Bayesian Deconvolution Algorithm in the Fiji Multi-View Deconvolution Plugin by Stephan Preibisch

naehse_et_al icon naehse_et_al

Image analysis and post-processing scripts for the Nähse et al. DFCP1 paper

opm icon opm

Control and analysis code for OPM using Snouty objective

plannotate icon plannotate

Webserver and command line tool for annotating engineered plasmids

spotcolocalizer icon spotcolocalizer

A script to measure distances of replication foci in E.coli using ImageJ and Python. For a more complete description, see Helgesen et al, 2015 (https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4357733/)

submission_checklist icon submission_checklist

A checklist to help you avoid all those minor errors when submitting a scientific manuscript

surfcut icon surfcut

Fiji macro for cutting confocal stacks at various depths relative to surface signal

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