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asteroid-game

Repository for refactoring the asteroid game code from assignment 6 in DIT184

bismark

A tool to map bisulfite converted sequence reads and determine cytosine methylation states

bowtie

An ultrafast memory-efficient short read aligner

bowtie2

A fast and sensitive gapped read aligner

bwa

Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)

bwa-pssm

A burrows-wheeler transform-based probabilistic short read mapper.

car-steering

course-material

Useful course material for DIT524

dit092-project-managment-tool

dit341-chess-web

dit355-app

dit355-datagenerator

dit355-documentation

dit355-filter-manager

drfast

github-issue-templates

:symbols: A collection of GitHub issue and pull request templates

group-04

hisat2

Graph-based alignment (Hierarchical Graph FM index)

latex-templates

Latex templates for different types of documents

megahit

Ultra-fast and memory-efficient (meta-)genome assembler

mosaik

reference-guided aligner for next-generation sequencing technologies

mrfast

micro-read Fast Alignment Search Tool

mrsfast

mrsFAST: micro-read substitution-only Fast Alignment Search Tool

onetbb

oneAPI Threading Building Blocks (oneTBB)

rmap

Short reads mapper for next-generation sequencing data (DNA-seq, BS-seq, etc)

salmon

🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment

shrimp

SHRiMP is a software package for aligning genomic reads against a target genome.

snpeff

sonar-analysis

star

RNA-seq aligner