klocey Goto Github PK

mete

Software for fitting and testing John Harte and colleagues' Maximum Entropy Theory of Ecology.

micro-encounter

Individual-based modeling to explore interactions between microbial activity, resource encounter dynamics, and dimensions of resource, trophic, and metabolic complexity

micromete

Repo for code from last spring where the Maximum Entropy Theory of Ecology was applied to abundance data from the Human Microbiome Project

microspeciation

mongogeolocation

Sample that shows how to do searches in Mongo of the form "Show me locations that are within X miles from me"

neural-networks-and-deep-learning

Code samples for my book "Neural Networks and Deep Learning"

pacman-python

Faithful Pac-Man adaptation using PyGame including bouncing fruit, ghosts that chase you with the A* algorithm, and support for external mazes of any size with custom color schemes for each maze. Cross-platform, high score, and joystick support.

partial-auc-c

Code for the concordant partial AUC and the partial C statistic

partitions

python based code for integer partitioning

peasantmath

novel geometric solutions to elementary mathematical operations

plfit

Power Law Distribution Fitting in python (and fortran and cython)

progbio

Teaching materials for classes teaching programming to biologists

python-abms

Source code for an individual-based modeling workshop

pythonguitemplate

A basic template for making a GUI in Python using Traits.

qb-2017

Spring 2017

quantitativebiodiversity-2015

Course materials for Indiana University's first Quantitative Biodiversity course

r-gis-tutorial

Spatial data in R: using R as a GIS

regression-workbench

Source code for a plotly / dash app for conducting regression

repeatphotopoints

An open science repository for repeat photo points and their analysis

residence-time

code and figures for a residence time modeling project

rules-of-life

Code and data for research related to NSF Rules of Life proposal.

sadmodels

Software to generate predicted forms of species abundance distributions, primarily random fraction models.

scalingmicrobiodiversity

code for the rare biosphere project

scikit-learn

scikit-learn: machine learning in Python

simmod

Python Simple Climate Model

specieslists

Lists of species observed by members of the Peloncillo Project

ssrp_2015

Jim Holland Summer Science Research Program

ssrp_2017

Data and R code for the 2017 Jim Holland SSRP program

stars-data-builder

python source code and data for compiling CMS Care Compare data for use in the CMS Overall Hospital Quality Star Rating system

statecoviddata

Covid-19 time-series data by US states