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adam

ADAM is a genomics analysis platform with specialized file formats built using Apache Avro, Apache Spark and Parquet. Apache 2 licensed.

bioinformatics_learning

Bioinformatics learning (for high performance computing, big data, and machine learning)

blobstore

A simple reference implementation of immutable data store

bwa

Burrow-Wheeler Aligner for pairwise alignment between DNA sequences

cockroach

A Scalable, Geo-Replicated, Transactional Datastore

collection-benchmark

Benchmark for sorted slice v.s. llrb v.s. btree

csp-cost-analysis

CSP Cost Analysis

deep-learning

Repo for the Deep Learning Nanodegree Foundations program.

deep_learning1

First Neural Network

deep_learning2

Image Classification

deep_learning3

deep_learning4

deep_learning5

deepvariant

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

etcd

A distributed consistent key-value store for shared configuration and service discovery

gatk

GATK4 development

genseq

Exercise for genome sequencing

grpc

The C based gRPC (C++, Node.js, Python, Ruby, Objective-C, PHP, C#)

grpc-java

The Java gRPC implementation. HTTP/2 based RPC

hail

Scalable genomic data analysis.

kochiku

Shard your builds for fun and profit

kops

Kubernetes Operations (kops) - Production Grade K8s Installation, Upgrades, and Management

kube-arbitrator

Policy based resource sharing for Kubernetes cluster

kubernetes

Production-Grade Container Scheduling and Management

kubernetes-ec2-autoscaler

A batch-optimized scaling manager for Kubernetes

llm-starter-pack

🤖 Get started with LLMs on your kind cluster, today!

minikube

Run Kubernetes locally

mixer

Istio's Mixer and its adapters

ollama

Get up and running with Llama 3.1, Mistral, Gemma 2, and other large language models.

opencpb

Open Computing Platform for Bioinformatics