Comments (3)
PaulHax
commented on August 13, 2024
Hello! That sounds like a nice thing to support. Is that something you can help with? Can you attach a sample DICOM file to this issue?
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luferau
commented on August 13, 2024
Hello @PaulHax, thanks for you attention.
Archive attached with GSPS sample files that provide text and graphics (ELIPSE) annotation for DICOM file and also XML dumps.
gsps-samples.zip
This is how this is rendered in Weasis:
Following is the example script that can create GSPS using DCMTK dcmpsmk and dcmodify tools. I hope this helps to better understand tags involved.
#!/bin/bash
INPUT_DICOM=mri-brain.dcm
OUTPUT_GSPS=mri-brain-gsps-text.dcm
CONTENT_LABEL="GSPS Text"
CONTENT_DESCRIPTION="GSPS Text example annotation"
CONTENT_CREATOR_NAME="NAME"
dcmpsmk "$INPUT_DICOM" "$OUTPUT_GSPS"
dcmodify --no-backup --insert "(0070,0080)=$CONTENT_LABEL" "$OUTPUT_GSPS"
dcmodify --no-backup --insert "(0070,0081)=$CONTENT_DESCRIPTION" "$OUTPUT_GSPS"
dcmodify --no-backup --insert "(0070,0084)=$CONTENT_CREATOR_NAME" "$OUTPUT_GSPS"
# Add Graphic Layer Sequence
dcmodify --no-backup --insert "(0070,0060)[0].(0070,0002)=ANNOTATION" "$OUTPUT_GSPS"
dcmodify --no-backup --insert "(0070,0060)[0].(0070,0062)=0" "$OUTPUT_GSPS"
dcmodify --no-backup --insert "(0070,0060)[0].(0070,0068)=Annotations" "$OUTPUT_GSPS"
dcmodify --no-backup --insert "(0070,0060)[0].(0070,0401)=63658\27358\57178" "$OUTPUT_GSPS"
# Add Graphic Annotation Sequence with Text
dcmodify --no-backup --insert "(0070,0001)[0].(0070,0002)=ANNOTATION" "$OUTPUT_GSPS"
# Text annotation 1
dcmodify --no-backup --insert "(0070,0001)[0].(0070,0008)[0].(0070,0003)=PIXEL" "$OUTPUT_GSPS"
dcmodify --no-backup --insert "(0070,0001)[0].(0070,0008)[0].(0070,0006)=Annotation text created with DCMTK #1" "$OUTPUT_GSPS"
dcmodify --no-backup --insert "(0070,0001)[0].(0070,0008)[0].(0070,0010)=200\200" "$OUTPUT_GSPS"
dcmodify --no-backup --insert "(0070,0001)[0].(0070,0008)[0].(0070,0011)=300\300" "$OUTPUT_GSPS"
dcmodify --no-backup --insert "(0070,0001)[0].(0070,0008)[0].(0070,0014)=100\100" "$OUTPUT_GSPS"
dcmodify --no-backup --insert "(0070,0001)[0].(0070,0008)[0].(0070,0015)=Y" "$OUTPUT_GSPS"
dcmodify --no-backup --insert "(0070,0001)[0].(0070,0008)[0].(0070,0232)[0].(0070,0251)=63658\27358\57178" "$OUTPUT_GSPS"
dcmodify --no-backup --insert "(0070,0001)[0].(0070,0008)[0].(0070,0232)[0].(0070,0253)=1" "$OUTPUT_GSPS"
# Text annotation 2
dcmodify --no-backup --insert "(0070,0001)[0].(0070,0008)[1].(0070,0003)=PIXEL" "$OUTPUT_GSPS"
dcmodify --no-backup --insert "(0070,0001)[0].(0070,0008)[1].(0070,0006)=Annotation text created with DCMTK #2" "$OUTPUT_GSPS"
dcmodify --no-backup --insert "(0070,0001)[0].(0070,0008)[1].(0070,0010)=600\200" "$OUTPUT_GSPS"
dcmodify --no-backup --insert "(0070,0001)[0].(0070,0008)[1].(0070,0011)=700\300" "$OUTPUT_GSPS"
dcmodify --no-backup --insert "(0070,0001)[0].(0070,0008)[1].(0070,0014)=800\100" "$OUTPUT_GSPS"
dcmodify --no-backup --insert "(0070,0001)[0].(0070,0008)[1].(0070,0015)=Y" "$OUTPUT_GSPS"
dcmodify --no-backup --insert "(0070,0001)[0].(0070,0008)[1].(0070,0232)[0].(0070,0251)=63658\27358\57178" "$OUTPUT_GSPS"
dcmodify --no-backup --insert "(0070,0001)[0].(0070,0008)[1].(0070,0232)[0].(0070,0253)=1" "$OUTPUT_GSPS"
if [ $? -eq 0 ]; then
echo "GSPS with text created as $OUTPUT_GSPS"
else
echo "Failed to create GSPS with text"
fi
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PaulHax
commented on August 13, 2024
Thanks for all this! Looks useful.
Next up for VolView file format work is upgrading "segmentation" support. Cuz AI. We could support you if you want to impliment this or if you have some funding to direct Kitware's way.
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