kisun Goto Github PK

2015

Public material for CS109

2015lab1

academicpages.github.io

Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes

angus

Materials for Analyzing Next-Generation Sequencing (ANGUS) course.

annocript

Annocript is a pipeline for the annotation of de-novo generated transcriptomes. It executes BLAST analysis with UniProt, NCBI Conserved Domain Database and Nucleotide divisions, Gene Ontology, UniPathways and the Enzyme Commission. It gives information about the longest ORF (using DNA2PEP) and non-coding potential of the sequences (using Portrait). A final heuristic makes Annocript able to identify putative long non-coding RNAs among your transcripts.

apreshill

Personal website of Alison Presmanes Hill

bedtools2

A powerful toolset for genome arithmetic.

cartwright_next-gen_scripts

Python scripts for analysis of next-gen sequencing data.

courses

Course homepages for some of the courses given at SciLifeLab

datasharing

The Leek group guide to data sharing

enhancement-proposals

Enhancement proposals for the Jupyter Ecosystem

faang-transcriptreconstruct

iods-final

IODS Final project

iods-project

My personal learning diary for this course

jekyll

:globe_with_meridians: Jekyll is a blog-aware, static site generator in Ruby

kpnb

learningfcc

trying some web stuffs

long-rna-seq-pipeline

STAR based ENCODE Long RNA-Seq processing pipeline

misc

ngs-analysis

Fork of https://code.google.com/p/ngs-analysis

notes-and-bits

some notes and summary of research articles

oneliners

Useful bash one-liners for bioinformatics.

phd

My PhD project and (almost) everything related to it.

rmarkdown

Dynamic Documents for R

rmd-cv

rnaseq

RNA sequencing analysis pipeline using STAR or HISAT2, with gene counts and quality control

rnaseq_tutorial

Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis including an introduction to: cloud computing, critical file formats, reference genomes, gene annotation, expression, differential expression, alternative splicing, data visualization, and interpretation.

rnaseqpipeline

Source code of the RNAseqPipeline of the Microarray and Sequencing platform - IGBMC - Strasbourg

sfg

The Simple Fool's Guide to population genomics using RNA-Seq

snakefiles

:snake: Snakefiles for common RNA-seq data analysis workflows.