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abc-cluster

An artificial bee colony algorithm for clustering

aster

ASTER: accurately estimating the number of cell types in single-cell chromatin accessibility data

audionet

A deep neural network for audio recognition with online prediction website

awesome-causality-algorithms

An index of algorithms for learning causality with data

be-abc

An improved artificial bee colony algorithm for protein folding optimization

causalegm

Deep Encoding Generative Modeling for Causal Inference

causalegm-feedstock

A conda-smithy repository for causalegm.

couplertm

CoupleRTM: Co-embedding and couple clustering with Roundtrip model

deepcage

Incorporating Transcription Factors in Genome-wide Prediction of Chromatin Accessibility

deepcdr

Cancer Drug Response Prediction via a Hybrid Graph Convolutional Network

deepcdr_lcq

deopen

A hybrid deep convolutional neural network for predicting chromatin accessibility

epigept

Geforme

gtm

hicgan

Hi-C data super-resolution with generative adversarial networks

icme-generative-models-summer-2023

ICME Generative Models Summer Workshop 2023

jae

Single cell joint embedding and modality prediction with autoencoder

kimmo1019.github.io

kmerforest

A sequence-based method to predict the impact of regulatory variants using random forest

lrcn

Chinese Image Captioning based on Long-term Recurrent Convolutional Networks

multiome

neurips2021_multimodal_topmethods

roundtrip

Roundtrip: density estimation with deep generative neural networks

scdec

Simultaneous deep generative modeling and clustering of single cell genomic data

scdec-hi-c

Deep embedding clustering for single cell Hi-C data

scdeephic

Deep clustering and embedding of sc-Hi-C data

scmtg

Single cell time-course analysis by learning the Markov Transition Generator

scmul

sctrace

Time-course single-cell multimodal analysis and trajectory inference using deep generative models

scvelo

RNA Velocity generalized through dynamical modeling