kibet-gilbert Goto Github PK

16srrna_meta-analysis_h3bionet_2016sop

!!!STILL UNDER DEVELOPMENT!!! This is a workflow tutorial of analysis of 16S-rRNA based on the H3BioNet standard operating procedure. It is incomplete for now.

bioconda-recipes

Conda recipes for the bioconda channel.

co1_metaanalysis

This a CO1 barcodes meta-analysis project repository. The project targets to conduct phylogenetic, biodiversity and phylogeographic analysis of CO1 barcodes sequences in BOLD systems from East African Arthropods

codata-rda-advanced-bioinformatics-2019

Material for the Advanced Bioinformatics Workshop Trieste 2019

covid

This Repo hosts SARS-CoV-2 genome sequencing, variant calling and assembly scripts. It relies on other cloned repositories and singularity images adapted from other tools and workflows.

deepbinner

a signal-level demultiplexer for Oxford Nanopore reads

eanbit_mngs

Metagenome assembly and annotation

elconcatenero

fasta2genotype

Convert STACKS fasta to many genotype formats

fieldbioinformatics

The ARTIC field bioinformatics pipeline

gilbert-kibet

Personal website

installing-augustus-with-manual-bamtools-installation-ubuntu-16.04

This is a step by step guide on how to install latest version of Installing Augustus 3.3.1 (with manual bamtools installation)

introduction-to-linux

This is a basic introductory course material prepared for the Open Science Workshop, Nairobi.

ipynbs

My jupyter notebooks

jekyll-uno

Jekyll-Uno - a minimal, responsive theme for Jekyll based on Uno for Ghost

mag

Assembly and binning of metagenomes

markdown-here

Google Chrome, Firefox, and Thunderbird extension that lets you write email in Markdown and render it before sending.

mngs

Shotgun metagenome assembly and gene prediction

mngs_slides

Workshop website page

nextclade

Viral genome alignment, clade assignment, mutation calling, and quality checks

openscienceke

Page for Open Science in Bioinformatics Worskop on 9th and 10th August, 2018.

pipelines_and_workflows

All information needed on creating bioinformatics pipleines and workflows

preprints_and_publishing_in_life_biomedical_sciences

This is a ten hour course on Preprint usage in life or biomedical sciences. It has been created by ASAPbio 2020 fellows group with the support of ASAPbio.

python4bioinformaticskg

Lecture resources for Python for Bioinformatics EANBiT course.

reproducibleresearchrstudio

This is a basic introductory course material prepared for the Open Science Workshop, Nairobi.

sars-cov-2-data-workflows

SARS-CoV-2 genomics surveillance work notebooks for data management and analysis.

sate-core

singularity

Repository with my singularity recipes hosted at Singularity Hub

snakemake_training

staged-recipes

A place to submit conda recipes before they become fully fledged conda-forge feedstocks