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.doom.d

Emacs config files

alco

Allele counter-alike

alco_old

Basic alleleCounter implementation

arboretum

Phylogenetics library

bamreligion

Utility to do assembly of unmapped reads

bayesmodels

Misc Bayesian models in Stan, pyMC3, etc.

binned_median

Online algorithm for computing median of a stream of non-negative integers, with low memory requirements

biod

Bioinformatics library in D. (utils for working with SAM, BAM, SFF formats)

boids

Boids flocking algorithm, using SFML

bpp

Estimate pairwise sequence distances by maximum likelihood

bpp_wrappers

cellular_automaton

Game of life (+others) with SFML

clustering_project

cnpipe

R package for copy number analysis

cnsim

Shiny app to simulate VAF and logR distributions for different copy number states

colourmap

copynumber

copynumber_calling_pipeline

d_telbam

D program to make telomerecat telbam files

darwinhighlight

Darwin Syntax Highlighting for Sublime Text / TextMate

dendropy

A Python library for phylogenetic scripting, simulation, data processing and manipulation.

directed_graph

Data structure from Professional C++ 5th ed.

enigma

Enigma machine emulator

ensembl_project

Counting gene duplications

evolsim

Student evolution paper exercise

fret

Ferret data manipulation scripts and html

gapmasker

Masks gaps from simulated alignments according to a template

gentools

Some convenience tools for genomic data

geoplotting

This is only for the free web hosting...

ggparallel

R package for creating hammock plots and parallel sets plots using the ggplot2 framework.