kevinblighe Goto Github PK

agilent

BED files and panel information for Agilent assays

aunerlab_ccle

awesome-bioinformatics-benchmarks

A curated list of bioinformatics bench-marking papers and resources.

awesome-expression-browser

😎 A curated list of software and resources for exploring and visualizing (browsing) expression data 😎

awesome-single-cell

Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

biofreelancers

Freelance bioinformaticians directory

biostar-engine

The Little Engine that Could:

biostar-recipes

Tools, Pipelines for the Biostar Engine

biostarsmisc

ciphertext

GUIs for encrypting/decrypting text using Caesar and Vigenère ciphers

clinicalgradednaseq

Automated next generation DNA sequencing analysis pipeline suited for clinical tests, with >99.9% sensitivity to Sanger sequencing at read-depth>18

clusgapkb

Parallelised Gap Statistic (Tibshirani et al., 2001) calculation and clustering

corlevelplot

Visualise correlation results and test significancies of these

e-mtab-6141

Data from Lewis, Barnes, Blighe et al., Cell Rep. 2019 Aug 27; 28(9): 2455–2470.e5.

enhancedvolcano

Publication-ready volcano plots with enhanced colouring and labeling

javawordprocessor

Multi-document text editor with basic functionality and drop-down menu system

kmergenerator

Generate all possible k-mers

pcatools

PCAtools: everything Principal Components Analysis

pythonscripts

rapidrnaseq

A wrapper for Kallisto

regparallel

Standard regression functions in R enabled for parallel processing over large data-frames.

rtutorials

R training notes for absolute beginners

scdataviz

scDataviz: single cell dataviz and downstream analyses

scdataviz_data

scegallery

Pretty plotting for SCE objects.

tcga-ee

TCGA Expression Explorer (shiny app)

tcgabarcode