Not able to use Editor.html about entity-fishing HOT 23 CLOSED

In Editor.js file i am unable to send POST request

	$.ajax({
	  type: 'POST',
	  url: 'service/processNERDQuery',
	  data: JSON.stringify(query),
	  beforeSubmit: setTimeCall(), 		  
	  success: SubmitSuccesfulNERD,
	  error: AjaxError,
	  dataType: "text"
	});

from entity-fishing.

How to get this Front End

from entity-fishing.

Hi @karthinuk107 the issues with the editor has been solved. You have to pull out the new version. Please remember that the editor, as well as all the interface is mostly done for testing and playing around. The editor is reacheable at the address http://localhost:8090/editor.html.

Regarding your second question, the usual interface is reacheable at the address http://localhost:8090/

from entity-fishing.

@lfoppiano actually infobox lookup should also be updated in editor.js to take into account the last modifications of the services.

(there is a secret feature in the editor, several persons can connect to it at the same time and collaboratively edit the text ;) - but the whole would require some refresh and tests)

from entity-fishing.

Still, I am not able to use

from entity-fishing.

Failed to load resource: the server responded with a status of 500 (Internal Server Error)
on http://localhost:8090/service/disambiguate

HTTP ERROR 405

Problem accessing /service/disambiguate. Reason:

Method Not Allowed

Please do let me know if i miss anything?

from entity-fishing.

@karthinuk107 the log from the server would be much helpful to undesrtand the problem ;-)

@kermitt2 ah indeed, will add the second call to fill the infobox

from entity-fishing.

Hi Ifoppiano,

Sorry. I couldn't find any error details in either /var/log/httpd/error.log or /var/log/apache/error.log

from entity-fishing.

I'm talking about the application log, if you run it with jetty you should get them in the bash console.

from entity-fishing.

Ok..Here you go..

:~/Factbot-simplest/news/nerd$ mvn -Dmaven.test.skip=true jetty:run-war
[INFO] Scanning for projects...
[WARNING]
[WARNING] Some problems were encountered while building the effective model for com.scienceminer.nerd:nerd-service:war:0.0.2
[WARNING] 'build.plugins.plugin.version' for org.apache.maven.plugins:maven-jar-plugin is missing. @ line 47, column 21
[WARNING]
[WARNING] It is highly recommended to fix these problems because they threaten the stability of your build.
[WARNING]
[WARNING] For this reason, future Maven versions might no longer support building such malformed projects.
[WARNING]
[INFO]
[INFO] ------------------------------------------------------------------------
[INFO] Building (N)ERD 0.0.2
[INFO] ------------------------------------------------------------------------
[INFO]
[INFO] >>> jetty-maven-plugin:9.4.6.v20170531:run-war (default-cli) > package @ nerd-service >>>
[WARNING] The POM for org.grobid.ner:grobid-ner:jar:0.4.2-SNAPSHOT is missing, no dependency information available
[INFO]
[INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ nerd-service ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 5 resources
[INFO]
[INFO] --- maven-compiler-plugin:3.6.1:compile (default-compile) @ nerd-service ---
[INFO] Nothing to compile - all classes are up to date
[INFO]
[INFO] --- maven-jar-plugin:3.0.2:jar (make-a-jar) @ nerd-service ---
[INFO] Building jar: /home/karthi_vincent/Factbot-simplest/news/nerd/target/nerd-service-0.0.2.jar
[INFO]
[INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ nerd-service ---
[INFO] Not copying test resources
[INFO]
[INFO] --- maven-compiler-plugin:3.6.1:testCompile (default-testCompile) @ nerd-service ---
[INFO] Not compiling test sources
[INFO]
[INFO] --- maven-surefire-plugin:2.20:test (default-test) @ nerd-service ---
[INFO] Tests are skipped.
[INFO]
[INFO] --- maven-war-plugin:3.1.0:war (default-war) @ nerd-service ---
[INFO] Packaging webapp
[INFO] Assembling webapp [nerd-service] in [/home/karthi_vincent/Factbot-simplest/news/nerd/target/nerd-service-0.0.2]
[INFO] Processing war project
[INFO] Copying webapp webResources [/home/karthi_vincent/Factbot-simplest/news/nerd/src/main/webapp/WEB-INF] to [/home/karthi_vincent/Factbot-simplest/news/nerd/target/nerd-service-0.0.2]
[INFO] Copying webapp webResources [/home/karthi_vincent/Factbot-simplest/news/nerd/doc] to [/home/karthi_vincent/Factbot-simplest/news/nerd/target/nerd-service-0.0.2]
[INFO] Copying webapp webResources [/home/karthi_vincent/Factbot-simplest/news/nerd/lib] to [/home/karthi_vincent/Factbot-simplest/news/nerd/target/nerd-service-0.0.2]
[INFO] Copying webapp resources [/home/karthi_vincent/Factbot-simplest/news/nerd/src/main/webapp]
[INFO] Webapp assembled in [1079 msecs]
[INFO] Building war: /home/karthi_vincent/Factbot-simplest/news/nerd/target/nerd-service-0.0.2.war
[INFO]
[INFO] <<< jetty-maven-plugin:9.4.6.v20170531:run-war (default-cli) < package @ nerd-service <<<
[INFO]
[INFO] --- jetty-maven-plugin:9.4.6.v20170531:run-war (default-cli) @ nerd-service ---
[INFO] Configuring Jetty for project: (N)ERD
[INFO] Logging initialized @8300ms to org.eclipse.jetty.util.log.Slf4jLog
[INFO] Context path = /
[INFO] Tmp directory = /home/karthi_vincent/Factbot-simplest/news/nerd/target/tmp
[INFO] Web defaults = org/eclipse/jetty/webapp/webdefault.xml
[INFO] Web overrides = none
[INFO] jetty-9.4.6.v20170531
[INFO] Scanning elapsed time=4716ms
[INFO] DefaultSessionIdManager workerName=node0
[INFO] No SessionScavenger set, using defaults
[INFO] Scavenging every 660000ms
Sep 01, 2017 7:24:11 AM com.sun.jersey.api.core.PackagesResourceConfig init
INFO: Scanning for root resource and provider classes in the packages:
com.scienceminer.nerd.service
Sep 01, 2017 7:24:11 AM com.sun.jersey.api.core.ScanningResourceConfig logClasses
INFO: Root resource classes found:
class com.scienceminer.nerd.service.NerdRestService
Sep 01, 2017 7:24:11 AM com.sun.jersey.api.core.ScanningResourceConfig init
INFO: No provider classes found.
Sep 01, 2017 7:24:11 AM com.sun.jersey.server.impl.application.WebApplicationImpl _initiate
INFO: Initiating Jersey application, version 'Jersey: 1.8 06/24/2011 12:17 PM'
01 Sep 2017 07:24.11 [INFO ] NerdRestService - Init Servlet NerdRestService.
01 Sep 2017 07:24.11 [DEBUG] NerdServiceProperties - Start NerdServiceProperties.getNewInstance
01 Sep 2017 07:24.11 [DEBUG] NerdServiceProperties - Instantiating NerdServiceProperties
01 Sep 2017 07:24.11 [DEBUG] NerdServiceProperties - Initiating property loading
01 Sep 2017 07:24.11 [WARN ] NerdServiceProperties - Cannot load com.scienceminer.nerd.property.service, trying in other ways.
01 Sep 2017 07:24.11 [DEBUG] NerdProperties - synchronized getNewInstance
01 Sep 2017 07:24.11 [DEBUG] NerdProperties - Initiating property loading
01 Sep 2017 07:24.11 [DEBUG] NerdProperties - loading Nerd.properties
01 Sep 2017 07:24.11 [ERROR] NerdProperties - Cannot set Nerd properties path from the context.
01 Sep 2017 07:24.11 [DEBUG] NerdProperties - Checking Properties
01 Sep 2017 07:24.11 [INFO ] NerdRestService - Init of Servlet NerdRestService finished.
01 Sep 2017 07:24.11 [INFO ] NerdRestService - Init lexicon.
01 Sep 2017 07:24.11 [DEBUG] Lexicon - Get new instance of Lexicon
01 Sep 2017 07:24.11 [INFO ] Lexicon - Initiating dictionaries
01 Sep 2017 07:24.11 [INFO ] Lexicon - End of Initialization of dictionaries
01 Sep 2017 07:24.11 [INFO ] NerdRestService - Init lexicon finished.
01 Sep 2017 07:24.11 [INFO ] NerdRestService - Init KB resources.
01 Sep 2017 07:24.11 [DEBUG] UpperKnowledgeBase - Get new instance of UpperKnowledgeBase
01 Sep 2017 07:24.11 [INFO ] UpperKnowledgeBase - Init Lexicon
01 Sep 2017 07:24.11 [INFO ] UpperKnowledgeBase - Lexicon initialized
01 Sep 2017 07:24.12 [INFO ] UpperKnowledgeBase -
Init Upper Knowledge base layer
init upper level language independent environment
building Environment for upper knowledge base
01 Sep 2017 07:24.12 [INFO ] KBEnvironment - /mnt/data/wikipedia/latest/wikidataIds.csv is not readable
01 Sep 2017 07:24.12 [INFO ] KBEnvironment - /mnt/data/wikipedia/latest/latest-all.json.bz2 is not readable
Environment built - 9155139 concepts.
01 Sep 2017 07:24.12 [INFO ] UpperKnowledgeBase - Init English lower Knowledge base layer
init Environment for language en
building Environment for language en
01 Sep 2017 07:24.12 [INFO ] KBEnvironment - /mnt/data/wikipedia/latest/en/stats.csv is not readable
01 Sep 2017 07:24.12 [INFO ] KBEnvironment - /mnt/data/wikipedia/latest/en/page.csv is not readable
01 Sep 2017 07:24.12 [INFO ] KBEnvironment - /mnt/data/wikipedia/latest/en/label.csv is not readable
01 Sep 2017 07:24.12 [INFO ] KBEnvironment - /mnt/data/wikipedia/latest/en/pageLabel.csv is not readable
01 Sep 2017 07:24.12 [INFO ] KBEnvironment - /mnt/data/wikipedia/latest/en/pageLinkIn.csv is not readable
01 Sep 2017 07:24.12 [INFO ] KBEnvironment - /mnt/data/wikipedia/latest/en/pageLinkOut.csv is not readable
01 Sep 2017 07:24.12 [INFO ] KBEnvironment - /mnt/data/wikipedia/latest/en/categoryParents.csv is not readable
01 Sep 2017 07:24.12 [INFO ] KBEnvironment - /mnt/data/wikipedia/latest/en/articleParents.csv is not readable
01 Sep 2017 07:24.12 [INFO ] KBEnvironment - /mnt/data/wikipedia/latest/en/childCategories.csv is not readable
01 Sep 2017 07:24.12 [INFO ] KBEnvironment - /mnt/data/wikipedia/latest/en/childArticles.csv is not readable
01 Sep 2017 07:24.12 [INFO ] KBEnvironment - /mnt/data/wikipedia/latest/en/redirectTargetsBySource.csv is not readable
01 Sep 2017 07:24.12 [INFO ] KBEnvironment - /mnt/data/wikipedia/latest/en/redirectSourcesByTarget.csv is not readable
01 Sep 2017 07:24.12 [INFO ] KBEnvironment - /mnt/data/wikipedia/latest/en/wikidata.txt is not readable
01 Sep 2017 07:24.12 [INFO ] KBEnvironment - /mnt/data/wikipedia/latest/en/translations.csv is not readable
01 Sep 2017 07:24.12 [INFO ] KBLowerEnvironment - Could not locate markup file in /mnt/data/wikipedia/latest/en
isLoaded: true
Environment built - 14651883 pages.
domains en / isLoaded: true
Warning: Orthopedic surgery is not a category found in Wikipedia.
Warning: Environment is not a category found in Wikipedia.
01 Sep 2017 07:24.12 [INFO ] UpperKnowledgeBase - Init German lower Knowledge base layer
init Environment for language de
building Environment for language de
01 Sep 2017 07:24.12 [INFO ] KBEnvironment - /mnt/data/wikipedia/latest/de/stats.csv is not readable
01 Sep 2017 07:24.12 [INFO ] KBEnvironment - /mnt/data/wikipedia/latest/de/page.csv is not readable
01 Sep 2017 07:24.12 [INFO ] KBEnvironment - /mnt/data/wikipedia/latest/de/label.csv is not readable
01 Sep 2017 07:24.12 [INFO ] KBEnvironment - /mnt/data/wikipedia/latest/de/pageLabel.csv is not readable
01 Sep 2017 07:24.12 [INFO ] KBEnvironment - /mnt/data/wikipedia/latest/de/pageLinkIn.csv is not readable
01 Sep 2017 07:24.12 [INFO ] KBEnvironment - /mnt/data/wikipedia/latest/de/pageLinkOut.csv is not readable
01 Sep 2017 07:24.12 [INFO ] KBEnvironment - /mnt/data/wikipedia/latest/de/categoryParents.csv is not readable
01 Sep 2017 07:24.12 [INFO ] KBEnvironment - /mnt/data/wikipedia/latest/de/articleParents.csv is not readable
01 Sep 2017 07:24.12 [INFO ] KBEnvironment - /mnt/data/wikipedia/latest/de/childCategories.csv is not readable
01 Sep 2017 07:24.12 [INFO ] KBEnvironment - /mnt/data/wikipedia/latest/de/childArticles.csv is not readable
01 Sep 2017 07:24.12 [INFO ] KBEnvironment - /mnt/data/wikipedia/latest/de/redirectTargetsBySource.csv is not readable
01 Sep 2017 07:24.12 [INFO ] KBEnvironment - /mnt/data/wikipedia/latest/de/redirectSourcesByTarget.csv is not readable
01 Sep 2017 07:24.12 [INFO ] KBEnvironment - /mnt/data/wikipedia/latest/de/wikidata.txt is not readable
01 Sep 2017 07:24.12 [INFO ] KBEnvironment - /mnt/data/wikipedia/latest/de/translations.csv is not readable
01 Sep 2017 07:24.12 [INFO ] KBLowerEnvironment - Could not locate markup file in /mnt/data/wikipedia/latest/de
isLoaded: true
Environment built - 3523959 pages.
01 Sep 2017 07:24.12 [INFO ] UpperKnowledgeBase - Init French lower Knowledge base layer
init Environment for language fr
building Environment for language fr
01 Sep 2017 07:24.12 [INFO ] KBEnvironment - /mnt/data/wikipedia/latest/fr/stats.csv is not readable
01 Sep 2017 07:24.12 [INFO ] KBEnvironment - /mnt/data/wikipedia/latest/fr/page.csv is not readable
01 Sep 2017 07:24.12 [INFO ] KBEnvironment - /mnt/data/wikipedia/latest/fr/label.csv is not readable
01 Sep 2017 07:24.12 [INFO ] KBEnvironment - /mnt/data/wikipedia/latest/fr/pageLabel.csv is not readable
01 Sep 2017 07:24.12 [INFO ] KBEnvironment - /mnt/data/wikipedia/latest/fr/pageLinkIn.csv is not readable
01 Sep 2017 07:24.12 [INFO ] KBEnvironment - /mnt/data/wikipedia/latest/fr/pageLinkOut.csv is not readable
01 Sep 2017 07:24.12 [INFO ] KBEnvironment - /mnt/data/wikipedia/latest/fr/categoryParents.csv is not readable
01 Sep 2017 07:24.12 [INFO ] KBEnvironment - /mnt/data/wikipedia/latest/fr/articleParents.csv is not readable
01 Sep 2017 07:24.12 [INFO ] KBEnvironment - /mnt/data/wikipedia/latest/fr/childCategories.csv is not readable
01 Sep 2017 07:24.12 [INFO ] KBEnvironment - /mnt/data/wikipedia/latest/fr/childArticles.csv is not readable
01 Sep 2017 07:24.12 [INFO ] KBEnvironment - /mnt/data/wikipedia/latest/fr/redirectTargetsBySource.csv is not readable
01 Sep 2017 07:24.12 [INFO ] KBEnvironment - /mnt/data/wikipedia/latest/fr/redirectSourcesByTarget.csv is not readable
01 Sep 2017 07:24.12 [INFO ] KBEnvironment - /mnt/data/wikipedia/latest/fr/wikidata.txt is not readable
01 Sep 2017 07:24.12 [INFO ] KBEnvironment - /mnt/data/wikipedia/latest/fr/translations.csv is not readable
01 Sep 2017 07:24.12 [INFO ] KBLowerEnvironment - Could not locate markup file in /mnt/data/wikipedia/latest/fr
isLoaded: true
Environment built - 3631810 pages.
01 Sep 2017 07:24.12 [INFO ] UpperKnowledgeBase - End of Initialization of Wikipedia environments
01 Sep 2017 07:24.12 [INFO ] UpperKnowledgeBase - Init Grobid
01 Sep 2017 07:24.12 [DEBUG] GrobidProperties - synchronized getNewInstance
01 Sep 2017 07:24.12 [DEBUG] GrobidProperties - Initiating property loading
01 Sep 2017 07:24.12 [DEBUG] GrobidProperties - loading GROBID_HOME path
01 Sep 2017 07:24.12 [ERROR] GrobidProperties - Cannot set grobid home path to the given one '../grobid/grobid-home/', because it does not exist.
com.scienceminer.nerd.exceptions.NerdException: Fail to initalise the grobid-ner component.
at com.scienceminer.nerd.utilities.Utilities.initGrobid(Utilities.java:276)
at com.scienceminer.nerd.kb.UpperKnowledgeBase.(UpperKnowledgeBase.java:97)
at com.scienceminer.nerd.kb.UpperKnowledgeBase.getNewInstance(UpperKnowledgeBase.java:51)
at com.scienceminer.nerd.kb.UpperKnowledgeBase.getInstance(UpperKnowledgeBase.java:41)
at com.scienceminer.nerd.service.NerdRestService.(NerdRestService.java:54)
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62)
at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
at java.lang.reflect.Constructor.newInstance(Constructor.java:423)
at com.sun.jersey.server.spi.component.ResourceComponentConstructor._construct(ResourceComponentConstructor.java:191)
at com.sun.jersey.server.spi.component.ResourceComponentConstructor.construct(ResourceComponentConstructor.java:179)
at com.sun.jersey.server.impl.resource.SingletonFactory$Singleton.init(SingletonFactory.java:137)
at com.sun.jersey.server.impl.application.WebApplicationImpl$10.f(WebApplicationImpl.java:584)
at com.sun.jersey.server.impl.application.WebApplicationImpl$10.f(WebApplicationImpl.java:581)
at com.sun.jersey.spi.inject.Errors.processWithErrors(Errors.java:193)
at com.sun.jersey.server.impl.application.WebApplicationImpl.getResourceComponentProvider(WebApplicationImpl.java:581)
at com.sun.jersey.server.impl.application.WebApplicationImpl.initiateResource(WebApplicationImpl.java:658)
at com.sun.jersey.server.impl.application.WebApplicationImpl.initiateResource(WebApplicationImpl.java:653)
at com.sun.jersey.server.impl.application.RootResourceUriRules.(RootResourceUriRules.java:124)
at com.sun.jersey.server.impl.application.WebApplicationImpl._initiate(WebApplicationImpl.java:1298)
at com.sun.jersey.server.impl.application.WebApplicationImpl.access$700(WebApplicationImpl.java:169)
at com.sun.jersey.server.impl.application.WebApplicationImpl$13.f(WebApplicationImpl.java:775)
at com.sun.jersey.server.impl.application.WebApplicationImpl$13.f(WebApplicationImpl.java:771)
at com.sun.jersey.spi.inject.Errors.processWithErrors(Errors.java:193)
at com.sun.jersey.server.impl.application.WebApplicationImpl.initiate(WebApplicationImpl.java:771)
at com.sun.jersey.server.impl.application.WebApplicationImpl.initiate(WebApplicationImpl.java:766)
at com.sun.jersey.spi.container.servlet.ServletContainer.initiate(ServletContainer.java:488)
at com.sun.jersey.spi.container.servlet.ServletContainer$InternalWebComponent.initiate(ServletContainer.java:318)
at com.sun.jersey.spi.container.servlet.WebComponent.load(WebComponent.java:609)
at com.sun.jersey.spi.container.servlet.WebComponent.init(WebComponent.java:210)
at com.sun.jersey.spi.container.servlet.ServletContainer.init(ServletContainer.java:373)
at com.sun.jersey.spi.container.servlet.ServletContainer.init(ServletContainer.java:556)
at javax.servlet.GenericServlet.init(GenericServlet.java:244)
at org.eclipse.jetty.servlet.ServletHolder.initServlet(ServletHolder.java:637)
at org.eclipse.jetty.servlet.ServletHolder.initialize(ServletHolder.java:421)
at org.eclipse.jetty.servlet.ServletHandler.initialize(ServletHandler.java:760)
at org.eclipse.jetty.servlet.ServletContextHandler.startContext(ServletContextHandler.java:348)
at org.eclipse.jetty.webapp.WebAppContext.startWebapp(WebAppContext.java:1501)
at org.eclipse.jetty.maven.plugin.JettyWebAppContext.startWebapp(JettyWebAppContext.java:357)
at org.eclipse.jetty.webapp.WebAppContext.startContext(WebAppContext.java:1463)
at org.eclipse.jetty.server.handler.ContextHandler.doStart(ContextHandler.java:785)
at org.eclipse.jetty.servlet.ServletContextHandler.doStart(ServletContextHandler.java:261)
at org.eclipse.jetty.webapp.WebAppContext.doStart(WebAppContext.java:545)
at org.eclipse.jetty.maven.plugin.JettyWebAppContext.doStart(JettyWebAppContext.java:432)
at org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:68)
at org.eclipse.jetty.util.component.ContainerLifeCycle.start(ContainerLifeCycle.java:131)
at org.eclipse.jetty.util.component.ContainerLifeCycle.doStart(ContainerLifeCycle.java:113)
at org.eclipse.jetty.server.handler.AbstractHandler.doStart(AbstractHandler.java:113)
at org.eclipse.jetty.server.handler.ContextHandlerCollection.doStart(ContextHandlerCollection.java:167)
at org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:68)
at org.eclipse.jetty.util.component.ContainerLifeCycle.start(ContainerLifeCycle.java:131)
at org.eclipse.jetty.util.component.ContainerLifeCycle.doStart(ContainerLifeCycle.java:113)
at org.eclipse.jetty.server.handler.AbstractHandler.doStart(AbstractHandler.java:113)
at org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:68)
at org.eclipse.jetty.util.component.ContainerLifeCycle.start(ContainerLifeCycle.java:131)
at org.eclipse.jetty.server.Server.start(Server.java:452)
at org.eclipse.jetty.util.component.ContainerLifeCycle.doStart(ContainerLifeCycle.java:105)
at org.eclipse.jetty.server.handler.AbstractHandler.doStart(AbstractHandler.java:113)
at org.eclipse.jetty.server.Server.doStart(Server.java:419)
at org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:68)
at org.eclipse.jetty.maven.plugin.AbstractJettyMojo.startJetty(AbstractJettyMojo.java:460)
at org.eclipse.jetty.maven.plugin.AbstractJettyMojo.execute(AbstractJettyMojo.java:328)
at org.eclipse.jetty.maven.plugin.AbstractJettyMojo.execute(AbstractJettyMojo.java:328)
at org.eclipse.jetty.maven.plugin.JettyRunWarMojo.execute(JettyRunWarMojo.java:64)
at org.apache.maven.plugin.DefaultBuildPluginManager.executeMojo(DefaultBuildPluginManager.java:134)
at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:207)
at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:153)
at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:145)
at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject(LifecycleModuleBuilder.java:116)
at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject(LifecycleModuleBuilder.java:80)
at org.apache.maven.lifecycle.internal.builder.singlethreaded.SingleThreadedBuilder.build(SingleThreadedBuilder.java:51)
at org.apache.maven.lifecycle.internal.LifecycleStarter.execute(LifecycleStarter.java:128)
at org.apache.maven.DefaultMaven.doExecute(DefaultMaven.java:307)
at org.apache.maven.DefaultMaven.doExecute(DefaultMaven.java:193)
at org.apache.maven.DefaultMaven.execute(DefaultMaven.java:106)
at org.apache.maven.cli.MavenCli.execute(MavenCli.java:863)
at org.apache.maven.cli.MavenCli.doMain(MavenCli.java:288)
at org.apache.maven.cli.MavenCli.main(MavenCli.java:199)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at org.codehaus.plexus.classworlds.launcher.Launcher.launchEnhanced(Launcher.java:289)
at org.codehaus.plexus.classworlds.launcher.Launcher.launch(Launcher.java:229)
at org.codehaus.plexus.classworlds.launcher.Launcher.mainWithExitCode(Launcher.java:415)
at org.codehaus.plexus.classworlds.launcher.Launcher.main(Launcher.java:356)
Caused by: org.grobid.core.exceptions.GrobidPropertyException: [GENERAL] Cannot set grobid home path to the given one '../grobid/grobid-home/', because it does not exist.
at org.grobid.core.utilities.GrobidProperties.load_GROBID_HOME_PATH(GrobidProperties.java:179)
at org.grobid.core.utilities.GrobidProperties.init(GrobidProperties.java:346)
at org.grobid.core.utilities.GrobidProperties.init(GrobidProperties.java:403)
at org.grobid.core.utilities.GrobidProperties.(GrobidProperties.java:334)
at org.grobid.core.utilities.GrobidProperties.getNewInstance(GrobidProperties.java:123)
at org.grobid.core.utilities.GrobidProperties.getInstance(GrobidProperties.java:102)
at com.scienceminer.nerd.utilities.Utilities.initGrobid(Utilities.java:267)
... 84 more
01 Sep 2017 07:24.12 [INFO ] NerdRestService - Init KB resources finished.
[INFO] Started o.e.j.m.p.JettyWebAppContext@2f10f633{/,file:///home/karthi_vincent/Factbot-simplest/news/nerd/target/nerd-service-0.0.2/,AVAILABLE}{/home/karthi_vincent/Factbot-simplest/news/nerd/target/nerd-service-0.0.2.war}
[INFO] Started ServerConnector@1224e1b6{HTTP/1.1,[http/1.1]}{0.0.0.0:8090}
[INFO] Started @16685ms
[INFO] Started Jetty Server

from entity-fishing.

@karthinuk107 the log is saying that you didn't configure properly the application:
Cannot set grobid home path to the given one '../grobid/grobid-home/', because it does not exist.

from entity-fishing.

@karthinuk107 you need to read the documentation and follow the install instructions:
http://nerd.readthedocs.io/en/latest/build.html

from entity-fishing.

Hi Kermirt,

apologies, i changed grobid path in nerd properties

mvn clean install
[INFO] Scanning for projects...
[WARNING]
[WARNING] Some problems were encountered while building the effective model for com.scienceminer.nerd:nerd-service:war:0.0.2
[WARNING] 'build.plugins.plugin.version' for org.apache.maven.plugins:maven-jar-plugin is missing. @ line 47, column 21
[WARNING]
[WARNING] It is highly recommended to fix these problems because they threaten the stability of your build.
[WARNING]
[WARNING] For this reason, future Maven versions might no longer support building such malformed projects.
[WARNING]
[INFO]
[INFO] ------------------------------------------------------------------------
[INFO] Building (N)ERD 0.0.2
[INFO] ------------------------------------------------------------------------
[WARNING] The POM for org.grobid.ner:grobid-ner:jar:0.4.2-SNAPSHOT is missing, no dependency information available
[INFO]
[INFO] --- maven-clean-plugin:2.5:clean (default-clean) @ nerd-service ---
[INFO] Deleting /home/karthi_vincent/Factbot-simplest/nerd/target
[INFO]
[INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ nerd-service ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 5 resources
[INFO]
[INFO] --- maven-compiler-plugin:3.6.1:compile (default-compile) @ nerd-service ---
[INFO] Changes detected - recompiling the module!
[INFO] Compiling 138 source files to /home/karthi_vincent/Factbot-simplest/nerd/target/classes
[INFO] /home/karthi_vincent/Factbot-simplest/nerd/src/main/java/com/scienceminer/nerd/utilities/WebClientUtilities.java: Some input files use or override a deprecated API.
[INFO] /home/karthi_vincent/Factbot-simplest/nerd/src/main/java/com/scienceminer/nerd/utilities/WebClientUtilities.java: Recompile with -Xlint:deprecation for details.
[INFO] /home/karthi_vincent/Factbot-simplest/nerd/src/main/java/com/scienceminer/nerd/kb/db/StringRecordDatabase.java: Some input files use unchecked or unsafe operations.
[INFO] /home/karthi_vincent/Factbot-simplest/nerd/src/main/java/com/scienceminer/nerd/kb/db/StringRecordDatabase.java: Recompile with -Xlint:unchecked for details.
[INFO]
[INFO] --- maven-jar-plugin:3.0.2:jar (make-a-jar) @ nerd-service ---
[INFO] Building jar: /home/karthi_vincent/Factbot-simplest/nerd/target/nerd-service-0.0.2.jar
[INFO]
[INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ nerd-service ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 10 resources
[INFO]
[INFO] --- maven-compiler-plugin:3.6.1:testCompile (default-testCompile) @ nerd-service ---
[INFO] Changes detected - recompiling the module!
[INFO] Compiling 10 source files to /home/karthi_vincent/Factbot-simplest/nerd/target/test-classes
[INFO]
[INFO] --- maven-surefire-plugin:2.20:test (default-test) @ nerd-service ---
[INFO]
[INFO] -------------------------------------------------------
[INFO]  T E S T S
[INFO] -------------------------------------------------------
[INFO] Running com.scienceminer.nerd.disambiguation.SentenceTest
[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.056 s - in com.scienceminer.nerd.disambiguation.SentenceTest
[INFO] Running com.scienceminer.nerd.disambiguation.TestProcessText
log4j:WARN No appenders could be found for logger (com.scienceminer.nerd.utilities.NerdProperties).
log4j:WARN Please initialize the log4j system properly.
log4j:WARN See http://logging.apache.org/log4j/1.2/faq.html#noconfig for more info.
>>>>>>>> GROBID_HOME=/home/karthi_vincent/Factbot-simplest/grobid/grobid-home
init upper level language independent environment
building Environment for upper knowledge base
Environment built - 9155139 concepts.
init Environment for language en
building Environment for language en
isLoaded: true
Environment built - 14651883 pages.
domains en / isLoaded: true
Warning: Orthopedic surgery is not a category found in Wikipedia.
Warning: Environment is not a category found in Wikipedia.
init Environment for language de
building Environment for language de
isLoaded: true
Environment built - 3523959 pages.
init Environment for language fr
building Environment for language fr
isLoaded: true
Environment built - 3631810 pages.
Setophaga ruticilla: 1.0
Setophaga: 0.0015192830367373664
ruticilla: 0.0
bird: 7.473971113775857E-5
washing machine: 0.45897020520637166
washing: 3.942409146377737E-4
machine: 3.896923023222438E-5
[ERROR] Tests run: 6, Failures: 0, Errors: 1, Skipped: 0, Time elapsed: 27.016 s <<< FAILURE! - in com.scienceminer.nerd.disambiguation.TestProcessText
[ERROR] testProcess(com.scienceminer.nerd.disambiguation.TestProcessText)  Time elapsed: 19.967 s  <<< ERROR!
java.lang.NoSuchFieldError: YEAR
        at com.scienceminer.nerd.disambiguation.TestProcessText.testProcess(TestProcessText.java:50)
[INFO] Running com.scienceminer.nerd.disambiguation.TestWeightedTerm
[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.036 s - in com.scienceminer.nerd.disambiguation.TestWeightedTerm
[INFO] Running com.scienceminer.nerd.service.TestQueryParser
aQuery1: {"text":"bla bla","abstract_":null,"claims":null,"description":null,"shortText":null,"language":null,"entities":null,"sentences":null,"resultLanguages":null,"runtime":0,"onlyNER":false,"nbest":false,"sentence":false,"format":"JSON","customisation":"generic","processSentence":null,"termVector":null
,"globalCategories":null,"tokens":null,"context":null,"filter":null,"full":false,"minSelectorScore":0.0,"minRankerScore":0.0}
/home/karthi_vincent/Factbot-simplest/nerd/src/test/resources/query.json
{"text":"John","abstract_":null,"claims":null,"description":null,"shortText":null,"language":null,"entities":null,"sentences":null,"resultLanguages":null,"runtime":0,"onlyNER":false,"nbest":false,"sentence":false,"format":"JSON","customisation":"generic","processSentence":null,"termVector":null,"globalCate
gories":null,"tokens":null,"context":null,"filter":null,"full":false,"minSelectorScore":0.0,"minRankerScore":0.0}
[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.061 s - in com.scienceminer.nerd.service.TestQueryParser
[INFO] Running com.scienceminer.nerd.service.NerdQueryTest
[INFO] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.032 s - in com.scienceminer.nerd.service.NerdQueryTest
[INFO] Running com.scienceminer.nerd.utilities.mediaWiki.TestMediaWikiParser
[INFO] Tests run: 12, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.924 s - in com.scienceminer.nerd.utilities.mediaWiki.TestMediaWikiParser
[INFO] Running com.scienceminer.nerd.utilities.NerdPropertyTest
[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.003 s - in com.scienceminer.nerd.utilities.NerdPropertyTest
[INFO]
[INFO] Results:
[INFO]
[ERROR] Errors:
[ERROR]   TestProcessText.testProcess:50 » NoSuchField YEAR
[INFO]
[ERROR] Tests run: 30, Failures: 0, Errors: 1, Skipped: 0
[INFO]
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 34.862 s
[INFO] Finished at: 2017-09-01T09:00:45+00:00
[INFO] Final Memory: 38M/503M
[INFO] ------------------------------------------------------------------------
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-surefire-plugin:2.20:test (default-test) on project nerd-service: There are test failures.
[ERROR]
[ERROR] Please refer to /home/karthi_vincent/Factbot-simplest/nerd/target/surefire-reports for the individual test results.
[ERROR] Please refer to dump files (if any exist) [date]-jvmRun[N].dump, [date].dumpstream and [date]-jvmRun[N].dumpstream.
[ERROR] -> [Help 1]
[ERROR]
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR]
[ERROR] For more information about the errors and possible solutions, please read the following articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoFailureException

from entity-fishing.

so it seems that this problem is related with grobid-ner previuos issue.

AFAIk you should rebuild grobid-ner using mvn clean install and then trying again to restart entity-fishing

from entity-fishing.

Hi Ifoppianio,

i followed ur Instruction but Build failure

$mvn clean install
[INFO] Scanning for projects...
[WARNING]
[WARNING] Some problems were encountered while building the effective model for com.scienceminer.nerd:nerd-service:war:0.0.2
[WARNING] 'build.plugins.plugin.version' for org.apache.maven.plugins:maven-jar-plugin is missing. @ line 47, column 21
[WARNING]
[WARNING] It is highly recommended to fix these problems because they threaten the stability of your build.
[WARNING]
[WARNING] For this reason, future Maven versions might no longer support building such malformed projects.
[WARNING]
[INFO]
[INFO] ------------------------------------------------------------------------
[INFO] Building (N)ERD 0.0.2
[INFO] ------------------------------------------------------------------------
[WARNING] The POM for org.grobid.ner:grobid-ner:jar:0.4.2-SNAPSHOT is missing, no dependency information available
[INFO]
[INFO] --- maven-clean-plugin:2.5:clean (default-clean) @ nerd-service ---
[INFO] Deleting /home/karthi_vincent/Factbot-simplest/nerd/target
[INFO]
[INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ nerd-service ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 5 resources
[INFO]
[INFO] --- maven-compiler-plugin:3.6.1:compile (default-compile) @ nerd-service ---
[INFO] Changes detected - recompiling the module!
[INFO] Compiling 138 source files to /home/karthi_vincent/Factbot-simplest/nerd/target/classes
[INFO] /home/karthi_vincent/Factbot-simplest/nerd/src/main/java/com/scienceminer/nerd/utilities/WebClientUtilities.java: Some input files use or override a deprecated API.
[INFO] /home/karthi_vincent/Factbot-simplest/nerd/src/main/java/com/scienceminer/nerd/utilities/WebClientUtilities.java: Recompile with -Xlint:deprecation for details.
[INFO] /home/karthi_vincent/Factbot-simplest/nerd/src/main/java/com/scienceminer/nerd/kb/db/StringRecordDatabase.java: Some input files use unchecked or unsafe operations.
[INFO] /home/karthi_vincent/Factbot-simplest/nerd/src/main/java/com/scienceminer/nerd/kb/db/StringRecordDatabase.java: Recompile with -Xlint:unchecked for details.
[INFO]
[INFO] --- maven-jar-plugin:3.0.2:jar (make-a-jar) @ nerd-service ---
[INFO] Building jar: /home/karthi_vincent/Factbot-simplest/nerd/target/nerd-service-0.0.2.jar
[INFO]
[INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ nerd-service ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 10 resources
[INFO]
[INFO] --- maven-compiler-plugin:3.6.1:testCompile (default-testCompile) @ nerd-service ---
[INFO] Changes detected - recompiling the module!
[INFO] Compiling 10 source files to /home/karthi_vincent/Factbot-simplest/nerd/target/test-classes
[INFO]
[INFO] --- maven-surefire-plugin:2.20:test (default-test) @ nerd-service ---
[INFO]
[INFO] -------------------------------------------------------
[INFO]  T E S T S
[INFO] -------------------------------------------------------
[INFO] Running com.scienceminer.nerd.disambiguation.SentenceTest
[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.038 s - in com.scienceminer.nerd.disambiguation.SentenceTest
[INFO] Running com.scienceminer.nerd.disambiguation.TestProcessText
log4j:WARN No appenders could be found for logger (com.scienceminer.nerd.utilities.NerdProperties).
log4j:WARN Please initialize the log4j system properly.
log4j:WARN See http://logging.apache.org/log4j/1.2/faq.html#noconfig for more info.
>>>>>>>> GROBID_HOME=/home/karthi_vincent/Factbot-simplest/grobid/grobid-home
init upper level language independent environment
building Environment for upper knowledge base
Environment built - 9155139 concepts.
init Environment for language en
building Environment for language en
isLoaded: true
Environment built - 14651883 pages.
domains en / isLoaded: true
Warning: Orthopedic surgery is not a category found in Wikipedia.
Warning: Environment is not a category found in Wikipedia.
init Environment for language de
building Environment for language de
isLoaded: true
Environment built - 3523959 pages.
init Environment for language fr
building Environment for language fr
isLoaded: true
Environment built - 3631810 pages.
Setophaga ruticilla: 1.0
Setophaga: 0.0015192830367373664
ruticilla: 0.0
bird: 7.473971113775857E-5
washing machine: 0.45897020520637166
washing: 3.942409146377737E-4
machine: 3.896923023222438E-5
[ERROR] Tests run: 6, Failures: 0, Errors: 1, Skipped: 0, Time elapsed: 21.014 s <<< FAILURE! - in com.scienceminer.nerd.disambiguation.TestProcessText
[ERROR] testProcess(com.scienceminer.nerd.disambiguation.TestProcessText)  Time elapsed: 20.242 s  <<< ERROR!
java.lang.NoSuchFieldError: YEAR
        at com.scienceminer.nerd.disambiguation.TestProcessText.testProcess(TestProcessText.java:50)
[INFO] Running com.scienceminer.nerd.disambiguation.TestWeightedTerm
[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.031 s - in com.scienceminer.nerd.disambiguation.TestWeightedTerm
[INFO] Running com.scienceminer.nerd.service.TestQueryParser
aQuery1: {"text":"bla bla","abstract_":null,"claims":null,"description":null,"shortText":null,"language":null,"entities":null,"sentences":null,"resultLanguages":null,"runtime":0,"onlyNER":false,"nbest":false,"sentence":false,"format":"JSON","customisation":"generic","processSentence":null,"termVector":null
,"globalCategories":null,"tokens":null,"context":null,"filter":null,"full":false,"minSelectorScore":0.0,"minRankerScore":0.0}
/home/karthi_vincent/Factbot-simplest/nerd/src/test/resources/query.json
{"text":"John","abstract_":null,"claims":null,"description":null,"shortText":null,"language":null,"entities":null,"sentences":null,"resultLanguages":null,"runtime":0,"onlyNER":false,"nbest":false,"sentence":false,"format":"JSON","customisation":"generic","processSentence":null,"termVector":null,"globalCate
gories":null,"tokens":null,"context":null,"filter":null,"full":false,"minSelectorScore":0.0,"minRankerScore":0.0}
[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.052 s - in com.scienceminer.nerd.service.TestQueryParser
[INFO] Running com.scienceminer.nerd.service.NerdQueryTest
[INFO] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.021 s - in com.scienceminer.nerd.service.NerdQueryTest
[INFO] Running com.scienceminer.nerd.utilities.mediaWiki.TestMediaWikiParser
[INFO] Tests run: 12, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.805 s - in com.scienceminer.nerd.utilities.mediaWiki.TestMediaWikiParser
[INFO] Running com.scienceminer.nerd.utilities.NerdPropertyTest
[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.013 s - in com.scienceminer.nerd.utilities.NerdPropertyTest
[INFO]
[INFO] Results:
[INFO]
[ERROR] Errors:
[ERROR]   TestProcessText.testProcess:50 » NoSuchField YEAR
[INFO]
[ERROR] Tests run: 30, Failures: 0, Errors: 1, Skipped: 0
[INFO]
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 27.894 s
[INFO] Finished at: 2017-09-01T09:40:10+00:00
[INFO] Final Memory: 33M/461M
[INFO] ------------------------------------------------------------------------
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-surefire-plugin:2.20:test (default-test) on project nerd-service: There are test failures.
[ERROR]
[ERROR] Please refer to /home/karthi_vincent/Factbot-simplest/nerd/target/surefire-reports for the individual test results.
[ERROR] Please refer to dump files (if any exist) [date]-jvmRun[N].dump, [date].dumpstream and [date]-jvmRun[N].dumpstream.
[ERROR] -> [Help 1]
[ERROR]
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR]
[ERROR] For more information about the errors and possible solutions, please read the following articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoFailureException

from entity-fishing.

@karthinuk107 I've just made an update which should fix this, could you update the nerd repo and retry? thanks

from entity-fishing.

Hi Kermitt,
Thank you so much,i now i can able to view
but small issues like, i didn't get entity response for longer text, like i have a news article 10 paragraph of text.but i got only few entity which kind of

from entity-fishing.

@karthinuk107 don't use the editor to just annotate text but rather the normal client- the one at http://localhost:8090 - this editor is very experimental and its purpose is to show some functionalities to annotate and update only local sentences in a real time manner within a longer text. It's quite buggy because it has not been update since a while (it is also not documented for this reason).

If you have some piece of text to annotate, use the normal client - you won't get these issues normally.

The entity-fishing model is directed to a granularity which is a paragraph (e.g. 5-15 sentences, ~500 words, something like a Reuters news). If your text is larger, you would need to segment it in your client before sending your requests. @lfoppiano has written a nice client for that, see
https://github.com/lfoppiano/grobid-py-utils/blob/master/python/client/NerdClient.py

from entity-fishing.

Thanks kermitt,

i don't see any NER option in 8090

from entity-fishing.

choose disambiguate - Text and here it is. by the way that's the default page when you load http://localhost:8090.

from entity-fishing.

Also look at the documentation - http://nerd.readthedocs.io/en/latest/console.html
and for building queries with text: http://nerd.readthedocs.io/en/latest/restAPI.html

from entity-fishing.

Hi Kermitt,
@kermitt2
@karthinuk107 I've just made an update which should fix this, could you update the nerd repo and retry?

I have updated the nerd repo , still build failure occurs.

from entity-fishing.

Hello Team,

I am getting the same error that is mention in this , after mvn clean install command the following test fail with this error

[ERROR] Tests run: 6, Failures: 0, Errors: 1, Skipped: 0, Time elapsed: 21.014 s <<< FAILURE! - in com.scienceminer.nerd.disambiguation.TestProcessText
[ERROR] testProcess(com.scienceminer.nerd.disambiguation.TestProcessText) Time elapsed: 20.242 s <<< ERROR!
java.lang.NoSuchFieldError: YEAR
at com.scienceminer.nerd.disambiguation.TestProcessText.testProcess(TestProcessText.java:50)

What I should do after this so that BUILD SUCCESS occurs ?

from entity-fishing.