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Kate Carbone's Projects

roi_macro icon roi_macro

ImageJ/FIJI macro for iterating through a directory of TIFs to measure and compare intensity values across channels in a manually defined ROI

saim_acquisition icon saim_acquisition

Original method of controlling TIRF motor for scanning angle interference microscopy using beanshell script. This has since been replaced with a micromanager plugin at https://github.com/valelab/saimCalibration

saim_calibration icon saim_calibration

Micromanager plugin for Scanning Angle Interference Microscopy (SAIM) and Arduino firmware for running laser calibration device explained in device_construction.pdf. Described in: Carbone, C. B., Vale, R. D., & Stuurman, N. (2016). An acquisition and analysis pipeline for scanning angle interference microscopy. Nat Meth, 13(11), 897–898.

saimanalysis icon saimanalysis

A Fiji plugin for analysis of Scanning Angle Interference Microscopy data

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