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cancer-metadata

machine-readable information for the TCGA dataset, mirrored from other sources

crc-models-2022

trained deep learning models for biomarker prediction from colorectal cancer pathology slides, 2022 edition

deepmed

deepmed-gui

GUI for the DeepMed pipeline

dl-mri

Deep Learning MRI image analysis

end2end-wsi-preprocessing

End-to-end pipeline to go from raw H&E slides to normalised extracted features for training

hanta-virus

heterogeneity-targeted

hia

Histopathology Image Analysis

highres-wsi-heatmaps

immunotherapymodels

llm-agent

LLM agents in medicine

marugoto

Tools to build deep learning pipelines.

medical_llm

Welcome to the Medical LLM repository, your premier gateway to a structured and meticulously designed pipeline exclusively crafted for large language models (LLMs) based medical projects.

mediswarm

MediSwarm is an open-source project for advancing medical deep learning using swarm intelligence and NVFlare. Developed by the Odelia consortium, it ensures data privacy through federated learning, enabling collaborative, decentralized model training across institutions for improved medical research and applications.

pathology_adversarial

preprocessing

preprocessing-ng

preprocessing-radiology

Repo for data preparation, extracting features from radimages. Adapt to marugoto attention MIL and the features are in h5

qupath_scripts

stamp

Solid Tumor Associative Modeling in Pathology

survival

swarm

Swarm Learning for computational pathology

swarm-learning-hpe

Experimental repo for Odelia project based on HPE platform. This repo contains multiple models for histopathology and radiology training.

synth-user-study

A user study investigating how realistic are synthetic images created by generative AI

thumbnail-classification

ukbiobank

Repository to incorporate code for the Brain projects

visualizing_image_embeddings

wanshi-utils

Ultilities repo for visualizations and result assesments