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ggsignif

Easily add significance brackets to your ggplots

git-filter-repo

Quickly rewrite git repository history (filter-branch replacement)

graph3d

he2rna_code

Train a model to predict gene expression from histology slides.

heatmaply

Interactive Heat Maps for R Using plotly

idep

Integrated Differential Expression and Pathway analysis

im4mec

Code for the im4MEC model described in the paper 'Interpretable deep learning model to predict the molecular classification of endometrial cancer from haematoxylin and eosin-stained whole-slide images: a combined analysis of the PORTEC randomised trials and clinical cohorts'.

immunedeconv

A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter)

knitr-examples

A collection of knitr examples

lintr

Static Code Analysis for R

lsr

R package associated with "Learning Statistics with R"

magick

Magic, madness, heaven, sin

marcinkosinski.github.io

methylkit

R package for DNA methylation analysis

mirtarget

moby

Moby Project - a collaborative project for the container ecosystem to assemble container-based systems

moma

MOMA

navdata

Network Analysis and Visualization Data

nginx-multiple-https-websites-on-one-server

Host Multiple HTTPS Websites on One Server

nginx-proxy

Automated nginx proxy for Docker containers using docker-gen

ngscheckmate

Software program for checking sample matching for NGS data

omicsplayground

Visual analytics platform for multi-omics data.

oncoscore

OncoScore is a tool to measure the association of genes to cancer based on citation frequency in biomedical literature. The score is evaluated from PubMed literature by dynamically updatable web queries.

pandoc-templates

Templates for pandoc

patchwork

The Composer of ggplots

phial

Precision Heuristics for Interpreting the Alteration Landscape

pkgdown

Generate static html documentation for an R package

plotgrouper

A shiny app-based GUI wrapper for ggplot2 with built-in statistical analysis.

porpoise

Pan-Cancer Integrative Histology-Genomic Analysis via Multimodal Deep Learning - Cancer Cell

prrophetic

R package