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alphafold

Open source code for AlphaFold.

alphapulldown

archrpkgs

Collection of PKGBUILDs for building R packages for Arch Linux

biopython

Official git repository for Biopython (converted from CVS)

clashchimeras

Python package to find chimeras in CRAC/CLASH and HITS-CLIP datasets

color_brewer

Just some .less files containing hex codes of the colors from colorbrewer.org

eme_selex

fastfold

Optimizing AlphaFold Training and Inference on GPU Clusters

flexbar

flexible barcode and adapter removal

kashyapchhatbar.github.io

mecp2_2022_manuscript

A critique of the hypothesis that CA repeats are primary targets of neuronal MeCP2

mhcihaplocaller

packages

Aim to be the bioinformatics repository with more and newer packages

pae_to_domains

Graph-based community clustering approach to extract protein domains from a predicted aligned error matrix

parallelfold

Modified version of Alphafold to divide CPU part (MSA and template searching) and GPU part. This can accelerate Alphafold when predicting multiple structures

planets

powerline

Powerline is a statusline plugin for vim, and provides statuslines and prompts for several other applications, including zsh, bash, tmux, IPython, Awesome and Qtile.

pysam

Pysam is a python module for reading and manipulating Samfiles. It's a lightweight wrapper of the samtools C-API. Pysam also includes an interface for tabix.

snakefiles

Snakemake pipelines for automated data analyses

snakemake-wrappers

This is the development home of the Snakemake wrapper repository, see

snakepipes

Customizable workflows based on snakemake and python for the analysis of NGS data

workflows-snakemake

One-day Snakemake workshop.