karrlab Goto Github PK
Name: Karr whole-cell modeling lab
Type: Organization
Bio: Developing whole-cell computational models to predict and engineer biology.
Location: 1255 5th Avenue, New York NY 10029
Blog: https://www.karrlab.org
Karr whole-cell modeling lab's Projects
bcforms
Toolkit for concretely describing macromolecular complexes
bpforms
Toolkit for concretely describing non-canonical DNA, RNA, and proteins
cell_model
FBA Cell Modeling Project
conv_opt
Python package for linear and quadratic programming
datanator
Toolkit for discovering and aggregating data for whole-cell modeling
datanator_frontend
Graphical web-based interface for the Datanator toolkit for discovering data for modeling cells
datanator_frontend_feedback_screenshots
datanator_pattern_design
Designing pattern of Datanator data models
datanator_query_python
A package to query and format the data in the integrated Datanator database
datanator_rest_api
A OAS3 compliant REST API for the Datanator integrated database
datanator_swagger_ui_bundle
bundled swagger-ui pip package
de_sim
Python-based object-oriented discrete-event simulation tool for complex, data-driven modeling
distribution_script
Scripts to generate protein abundance distributions per publication in paxdb
examples_for_presentations
Examples for presentations
flask-whooshalchemy
Whoosh indexing capabilities for Flask-SQLAlchemy
gdoc_down
Command line programs to save Google documents to text and LaTeX files
intro_to_wc_modeling
Whole-cell modeling tutorials
junit2html
Turn Junit XML reports into self contained HTML reports
karr_lab_aws_manager
Package to manage AWS services run by the Karr Lab
karr_lab_build_utils
Utilities for testing Python code and its downstream dependencies, submitting coverage reports, conducting static analyses, and generating documenation
karr_lab_code
Code for the Karr Lab's code website
karr_lab_data
Code for the Karr Lab data website
karr_lab_docs
Code for the Karr Lab docs website
karr_lab_website
Code for the Karr Lab website
latex-grant
LaTeX classes for formatting scientific documents, including US federal grant proposals.
log
because you deserve better than log4j
minicell_website
MiniCell project website
nose2unitth
Convert nose-style test reports to UnitTH-style test reports
obj_tables
Tools for creating and reusing high-quality spreadsheets
obj_tables_revisioning_tutorial_repo
Dummy repository for the ObjTables tutorial on revisioning and migration
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