Kaitlin Sullivan

👋 Hi, I’m @kaitsull! I am a neuroscience PhD candidate in the Cembrowski Lab at the University of British Columbia.

Interests

🔬 My PhD work investigates the neural mechanisms underlying fear memory.
🎨 I am also highly interested in exploring the intersection of art and science through digital mediums.

My Repos

mFISH Analysis

Fiji (ImageJ) Menu Item for mFISH registration, segmentation, quantification
R Package for mFISH, including Shiny App for easy clustering and dimensionality reduction

scRNA-seq Tools

Automated web search for antibodies based on scRNA-seq marker genes (currently for human brain tissue)

Currently Learning & Creating...

🌱 Deep learning in Python (for scientific and artistic venues)
🌱 R Package for mFISH Analysis
🌱 Shiny App for mFISH Analysis

Collaborate

💞️ Always open to collaborating on work automating and quantifying histology, as well as the analysis of transcriptomic data.
💞️ I’m also looking to collaborate on projects that are looking to traverse the science-art rift

Kaitlin Sullivan's Projects

fancyplots

STAT 545 Assignment for learning to create an R Package

kaitsull

Config files for my GitHub profile.

mfishoverlay

Java-based ImageJ plugin for the creation of pseudocoloured mFISH overlays. Part of the Happy Hippocampus HiPlex Menu for ImageJ by Kaitlin Sullivan.

napari_lattice

Napari plugin for custom analysis and visualization of lattice lightsheet and Oblique Plane Microscopy data. The plugin is optimized for data from the Zeiss lattice lightsheet microscope.

proteinsearch

An automated web search for human antibodies labelling neurons and glia in the brain. Takes the direct output of Seurat's "FindMarkers()" and returns a data frame of antibodies based on information from the human protein atlas.

reproducible_analysis_demo

STAT 545 Assignment for running reproducible analyses

ruhi

R-based Utilities for Hiplex

solart

SolART is a web application that turns solar weather data from NASA into synth tones and moving artwork. By feeding real-time data into an AI artwork generator (Lucid Sonic Dreams), SolART creates beautiful visualizations that change in response to proton flux caused by solar activity. SolART further sonificates the data by representing solar activity as pitch.