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Hey there, I'm Jason 👋

About Me

  🧠  Applying machine learning and engineering data pipelines to support research of the brain
  🏫  PhD in Medical Biophysics at University of Western Ontario
  👨‍🎓  BEng in Electrical & Biomedical Engineering at McMaster University

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Jason Kai's Projects

actions icon actions

Centralized repo of reusable GH actions

afids-cnn icon afids-cnn

Automatic localization and identification of salient brain landmarks

afids-utils icon afids-utils

Utility functions for working with AFIDs data / workflows

cerebro_viewer icon cerebro_viewer

A pythonic 3D viewer to visualize and plot brains and neuroimaging data

datalad-osf icon datalad-osf

Utility scripts to facilitate use of Datalad with OSF

dataprobe3d icon dataprobe3d

Slicer project week Western - data probe for the 3D viewer

hippunfold icon hippunfold

BIDS App for Hippunfold (automated hippocampal unfolding and subfield segmentation)

hippunfold_deps icon hippunfold_deps

Dependencies container for hippocampal_autotop (niftynet, minified fsl/ants, c3d, mcr)

jubids icon jubids

pyBIDS, but in Julia (for learning purposes)

logos icon logos

Repo to store logos for acknowledgements/affiliations

mriqc icon mriqc

Automated Quality Control and visual reports for Quality Assesment of structural (T1w, T2w) and functional MRI of the brain

mrtpipelines icon mrtpipelines

Repository to store MRTrix3 tractography pipelines created with Nipype

mrtproc icon mrtproc

Snakemake / SnakeBIDS workflow for preprocesing using Mrtrix3

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