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buscogeny

Create a phylogenetic tree from BUSCO identified single copy genes

cervus_filter

Filters cervus results for parentage matches and reports mismatches in target regions

coin_flip_app

A coin flipping app for use with Magic The Gathering

core_gene_phylo

Repository for code to create bacterial core gene phylogenies

directory_structuring

gatc

converts 50k data to input for cervus

genome-downloading

quick script for creating a genome download script for NCBI

igs-checker

A python script to annotate repeat regions in an IGS

inherited_disease_panel

Scripts to parse data from inherited disease panels

mage

Multilocus Alignment GEnerator

minion-assembler

Bash script to automate assembly of bacterial genomes

ncbi_genome_download

Creates a bash script for downloading all reference genomes of a specified genus

ont-summary-seq-demux

A script to automate subsetting a summary_seq.txt file into separate barcode files based on multiplex data

pipi

Pestivirus Identification Pipeline

signal_peptide_prediction

Python script to run 4 signal peptide prediction software and generate a consensus

trycycler_scripts

Scripts for genome assembly with trycycler

ubcg_filter

Script to filter UBCG alignments and output alignment containing equal number of isolates

unicycler

hybrid assembly pipeline for bacterial genomes

virsequel

Virsequel is a Python script for identifying viral sequences in RNA-seq data.

watermelon_mosaic

xanthomonas_blastdb

Database of Xanthomonas genomes for local blast searching