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Hi πŸ‘‹ My name is Jill Hagey

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I am a bioinformatian working at the Division of Health Quality Promotion at the CDC. My repos include those for work and those for outside of work.

  • 🌍 I'm based in Atlanta, GA
  • πŸ“« You can contact me at [email protected]
  • 🌱 I’m currently learning Nextflow and Github actions
  • πŸ˜„ Pronouns: they/them/theirs
  • πŸ”­ I’m currently working on πŸ”₯🐦πŸ”₯PHoeNIx: A short-read pipeline for healthcare-associated and antimicrobial resistant pathogens

πŸ› οΈ Languages and Tools

linux linux linux

Nextflow Python R Bash

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Jill V. Hagey, PhD's Projects

alembic icon alembic

βš—οΈ A Jekyll boilerplate theme designed to be a starting point for any Jekyll website

docker-builds icon docker-builds

:package: :whale: Dockerfiles and documentation on tools for public health bioinformatics

documentation-theme-jekyll icon documentation-theme-jekyll

A Jekyll-based theme designed for documentation and help systems. See the link for detailed instructions on setting up and configuring everything.

gamma icon gamma

Gene Allele Mutation Microbial Assessment

krakentools icon krakentools

KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files

modules icon modules

Repository to host tool-specific module files for the Nextflow DSL2 community!

phoenix icon phoenix

πŸ”₯🐦πŸ”₯PHoeNIx: A short-read pipeline for healthcare-associated and antimicrobial resistant pathogens

test-datasets icon test-datasets

Test data to be used for automated testing with the nf-core pipelines

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