Jill V. Hagey, PhD's Projects
βοΈ A Jekyll boilerplate theme designed to be a starting point for any Jekyll website
Scripts for 16S sequence processing and R analysis
Scripts used for processing of metagenomic data on CDRF project
scripts for python courses
Machine learning project for cryptosporidum comparative genomics
16s analysis for Depeters rumen sampling study
:package: :whale: Dockerfiles and documentation on tools for public health bioinformatics
A Jekyll-based theme designed for documentation and help systems. See the link for detailed instructions on setting up and configuring everything.
Gene Allele Mutation Microbial Assessment
Home page that links all github projects
KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files
Github Pages template for academic personal websites
Repository to host tool-specific module files for the Nextflow DSL2 community!
π₯π¦π₯PHoeNIx: A short-read pipeline for healthcare-associated and antimicrobial resistant pathogens
Test data to be used for automated testing with the nf-core pipelines
Landing Page for Tutorials
A variety of scripts used to process or parse sequencing files