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aida-package

R package with helper functions for courses on _A_dvanced topics in and _I_ntro to _D_ata _A_nalysis

bayesspace

Bayesian model for clustering and enhancing the resolution of spatial gene expression experiments.

caret

caret (Classification And Regression Training) R package that contains misc functions for training and plotting classification and regression models

complexheatmap

Make Complex Heatmaps

deeplearningzerotoall

TensorFlow Basic Tutorial Labs

glmgampoi

Fit Gamma-Poisson Generalized Linear Models Reliably

jags_examples

A large set of JAGS examples using R

keras

Deep Learning for humans

mcmcpack

:exclamation: This is a read-only mirror of the CRAN R package repository. MCMCpack — Markov Chain Monte Carlo (MCMC) Package. Homepage: https://CRAN.R-project.org/package=MCMCpack

orthomap

pmartr

The pmartR R package provides functionality for quality control, normalization, exploratory data analysis, and statistical analysis of mass spectrometry (MS) omics data, in particular proteomic (either at the peptide or the protein level), lipidomic, and metabolomic data. This includes data transformation, specification of groups that are to be com

r_utilities

rstanarm

rstanarm R package for Bayesian applied regression modeling

scpubr

Package to generate high quality, publication ready visualizations for single cell transcriptomics data.

scrna-seq_notes

A list of scRNA-seq analysis tools

scvi-tools

Deep probabilistic analysis of single-cell omics data

seurat

R toolkit for single cell genomics

sgsea_v0.13

singler

SingleR: Single-cell RNA-seq cell types Recognition (legacy version)

stringtie

Transcript assembly and quantification for RNA-Seq

the-art-of-linear-algebra

Graphic notes on Gilbert Strang's "Linear Algebra for Everyone"

transport

:exclamation: This is a read-only mirror of the CRAN R package repository. transport — Computation of Optimal Transport Plans and Wasserstein Distances. Homepage: http://www.dominic.schuhmacher.name

velocyto.r

RNA velocity estimation in R