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abac

adaptive arithmetic coder

aws-doc-sdk-examples

Welcome to the AWS Code Examples Repository. This repo contains code examples used in the AWS documentation, AWS SDK Developer Guides, and more. For more information, see the Readme.rst file below.

bitio

UNSTABLE API!!! C library for buffered bit reading/writing, byte and bit order swapping, stream bit alignment, command line parsing, etc.

bwa

Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)

cabac

Context Adaptive QM Coding

ci-server-scripts

Scripts used on CI server (jenkins)

fastore

FaStore - high-performance FASTQ files compressor

fermikit

De novo assembly based variant calling pipeline for Illumina short reads

free-programming-books

:books: Freely available programming books

gencode-backmap

Mapping of GENCODE gene annotation set files to older assembies

imagecodingresearchtools

kvazaar

An open-source HEVC encoder

libde265

Open h.265 video codec implementation.

libstatgen

Useful set of classes for creating statistical genetic programs.

miniasm

Ultrafast de novo assembly for long noisy reads (though having no consensus step)

minimap2

A versatile pairwise aligner for genomic and spliced nucleotide sequences

minio

High Performance, Kubernetes Native Object Storage

orcom

Overlapping Reads COmpression with Minimizers

pipes

Pipelines for expressive code on collections in C++

ppm-console-app

Prediction by Partial Matching implementation

s3-utils

Utilities and tools based around Amazon S3 to provide convenience APIs in a CLI

shrimp

SHRiMP is a software package for aligning genomic reads against a target genome.

spdlog

Fast C++ logging library.

trimmomatic

Read trimming tool for Illumina NGS data.

udf_infusion

A MySQL functionality enhancement UDF

yuview

The Free and Open Source Cross Platform YUV Viewer with an advanced analytics toolset