Comments (5)
Fantastic, thank you!! Looking forward to your talk tomorrow :)
from datasets.
orf.csv.gz
here: https://github.com/jump-cellpainting/datasets/tree/main/metadata
and so is crispr.csv.gz
now
from datasets.
Hello @nmra-abarthmaron, thank you for your interest in our dataset!
so I am assuming that these are the gene perturbations, is that correct?
That's correct. The missing JCP2022 ID
s correspond to the genes that were overexpressed (using ORFs).
If so, my main question is - is there metadata (either in the form of another table, or individual platemap CSVs) for these conditions yet?
We are working on generating another table for the ORF dataset, and it will be available soon.
and I'm just being too over-eager.
It is exciting that you have already begun digging into the data :)
from datasets.
Hi @niranjchandrasekaran. Thank you so much for the prompt reply!
We are working on generating another table for the ORF dataset, and it will be available soon.
Great!
It is exciting that you have already begun digging into the data :)
:)
from datasets.
We are working on generating another table for the ORF dataset,
All set!
See orf.csv.gz
here: https://github.com/jump-cellpainting/datasets/tree/main/metadata
from datasets.
Related Issues (20)
- How to obtain ORF features HOT 4
- Weird batch effects in source_1
- Technical confounders in cpg0016 HOT 4
- Unable to replicate CellProfiler pipeline output HOT 1
- AGP channel looks strange/different in some sources HOT 2
- Are pixel sizes the same across all sources? HOT 8
- What are the actual controls for the CRISPR plates? HOT 5
- Spaces in the plates` folder names in two batches of source_3 HOT 2
- Merging on compounds InChIKey HOT 2
- Update on deep learning embeddings HOT 1
- Missing metadata parts and a bug for source 11 HOT 8
- Missing cell locations parquet, source 5, plate ATSJUM206 HOT 8
- Missing compound (JCP2022_088778) HOT 14
- Metadata reorganisation to improve reliability HOT 1
- update "Does JUMP contain X compound/gene?" link on FAQ HOT 6
- Add Metadata_pert_type to CRISPR metadata
- Converting Metadata_JCP2022 column information from the mad_int_featselect_harmony.parquet file into treatment names HOT 1
- ReadTimeoutError while downloading files with the b.fetch() command using Quilt’s Python client HOT 2
- Cells.csv column name information HOT 1
- Locating data obtained from channels associated with different cellular components HOT 2
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from datasets.