Is gene perturbation metadata currently available? (cpg0016-jump) about datasets HOT 5 CLOSED

Fantastic, thank you!! Looking forward to your talk tomorrow :)

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orf.csv.gz here: https://github.com/jump-cellpainting/datasets/tree/main/metadata

and so is crispr.csv.gz now

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Hello @nmra-abarthmaron, thank you for your interest in our dataset!

so I am assuming that these are the gene perturbations, is that correct?

That's correct. The missing JCP2022 IDs correspond to the genes that were overexpressed (using ORFs).

If so, my main question is - is there metadata (either in the form of another table, or individual platemap CSVs) for these conditions yet?

We are working on generating another table for the ORF dataset, and it will be available soon.

and I'm just being too over-eager.

It is exciting that you have already begun digging into the data :)

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Hi @niranjchandrasekaran. Thank you so much for the prompt reply!

We are working on generating another table for the ORF dataset, and it will be available soon.

Great!

It is exciting that you have already begun digging into the data :)

:)

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We are working on generating another table for the ORF dataset,

All set!

See orf.csv.gz here: https://github.com/jump-cellpainting/datasets/tree/main/metadata

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