Comments (3)
Hi Cameron,
Thanks for your message! Are you using a recent version of bombcell? I pushed some changes for kilosort4 ~1 month ago that might be related KS4 saves spikes as singles (rather than doubles) so we convert them with these changes. I also just added more changes to correctly handle template waveforms (which have a different size in KS4). You now have an input kilosortVersion
you should set to 4
in bc_qualityParamValues
to get values that make more sense for kilosort4.
Let me know if a more recent version works. If it doesn't, would you be able to send me the following files:
- spike_times.npy
- amplitudes.npy
from bombcell.
Ah - that fixed the issue! Should have known better to raise an issue without pulling the latest updates. Thanks for your help.
from bombcell.
My pleasure! Let me know if you run into any issues :)
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